<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01317

Description AGAP003866-PA-like protein
SequenceMNWKEYAVPNCPASVYYVPNFISEEEEASILQSISKTPKPRWTQLSNRRLVNYGGIPHPKGMIAEDMPVWLTQYVQRINQLNVFDHGINANHVLVNEYLPGQGIMPHLDGPLFYPIIATISCGSHTVLEYDRQVETGPADNRSLVRESVAKMLLEPRSLLVVKDDMYHTYFHSIKELKQDMVDSTITNLSLLCNAKLNDIGVASTVFAKSYTEMASSSNVSGNLVDELEEAFQSCIHALTKEESATGIDKDEIKVEVDQTTLKFIDLARQMEAFFLQKRFLLSALKPDLLLKEENFDLKQEIGRKDELIRKHYEKIETWKQLLSDQQNFNKPIQSMPPDMRGNLAGGAPGAPAGLLTGGGMNMPMQLFQQGGIPRNVGQAGAGSGFQGAGPNLQGPLAYLEKTASNIGEPPVRIGPAWEWEMVEGDAGGAGDAVEVVVEEEVVAVAAWQSFTVAH
Length455
PositionHead
OrganismAnopheles sinensis (Mosquito)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Nematocera> Culicoidea> Culicidae> Anophelinae> Anopheles.
Aromaticity0.08
Grand average of hydropathy-0.269
Instability index44.31
Isoelectric point5.01
Molecular weight50303.62
Publications
PubMed=24438588

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01317
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.15|      24|      30|     336|     365|       1
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  336-  363 (36.83/27.51)	MppdMRGNLAG..GAPGAPAGlLTGGGMNM
  368-  393 (39.32/20.22)	F...QQGGIPRnvGQAGAGSG.FQGAGPNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.65|      10|      30|     288|     297|       2
---------------------------------------------------------------------------
  288-  297 (16.85/10.97)	DLLLKEENFD
  321-  330 (17.80/11.96)	QLLSDQQNFN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01317 with Med28 domain of Kingdom Metazoa
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