<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01316

Description AGAP002664-PA-like protein
SequenceMNLEPINNALSQLRVLRSSVGQVFESLGNGVRADHGEEGKEQKFLQELQELLNSVNANLKEFESCVSDLTPPQAPLNLANSAYLSLETNLERQALYPHLVQSYKWHDKLHEYSTFASTLLQQNSLKRSYYTNTKRRRSLPSSHLATPQMVDNLIGSIHYNNMNLKIVRPFMTNAILHITIARVLRAAVILKGLLIEWVTVKGYEESLLDGVDEHWTESRHHVFRKVQDHAHSAMLHFFSPTLPELAIRSFITWFRSYVTLFADPCKKCGKHLHNTLPPTWRDLRTLEPFHEECKQ
Length295
PositionTail
OrganismAnopheles sinensis (Mosquito)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Nematocera> Culicoidea> Culicidae> Anophelinae> Anopheles.
Aromaticity0.09
Grand average of hydropathy-0.383
Instability index53.53
Isoelectric point8.30
Molecular weight34007.43
Publications
PubMed=24438588

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01316
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.04|      15|      25|     252|     267|       1
---------------------------------------------------------------------------
  252-  267 (26.68/21.54)	TWfRSYVTL..FADPCKK
  279-  295 (26.36/15.71)	TW.RDLRTLepFHEECKQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.81|      41|     177|      25|      69|       2
---------------------------------------------------------------------------
   25-   69 (56.15/59.43)	ESLGNGVrADHGEEGKEQKFlQELQELLNSvnANLKEFESCVSDL
  205-  245 (75.66/58.61)	ESLLDGV.DEHWTESRHHVF.RKVQDHAHS..AMLHFFSPTLPEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.49|      20|      28|     113|     132|       3
---------------------------------------------------------------------------
  113-  132 (33.06/24.39)	STFASTLLQQNSLKRSYYTN
  142-  161 (35.43/26.64)	SHLATPQMVDNLIGSIHYNN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01316 with Med27 domain of Kingdom Metazoa
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