<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01299

Description Mediator of RNA polymerase II transcription subunit 6
SequenceMANPNEPPLDEIQWRSPQIIASMGGLHSNTILFYFAESPFFERTSNNAVVMNQALNNASMFHYIATRDAFEGRLKTMSGLEFIVGEEPAISAPGMGTGVWVIRKQTRRKRFQEEDEVIVHSSYFVVGENIYMAPSLMDILASRVMTISSVIAKALPAAESARRWRPSTGHVYQLPTTQPTARPKGIESKPDTPMPDAIGKPAAAPAPKNDEVSLERAAEEAFMVHMRYGGEYIDENPITGRPGEFHLSSTGRKPIPPPQLGQQTGISTMNGPTINTKLDDKKDASSDKTPRSATMPKPKRRKSKMSTGTPAAS
Length313
PositionHead
OrganismStachybotrys chartarum IBT 40288
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Stachybotryaceae> Stachybotrys.
Aromaticity0.07
Grand average of hydropathy-0.516
Instability index55.82
Isoelectric point9.15
Molecular weight34342.69
Publications
PubMed=25015739

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364143
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP01299
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     134.92|      41|      90|     166|     208|       1
---------------------------------------------------------------------------
  166-  208 (66.59/34.86)	PSTGHVYQLPTTQ.PTARPKgIESKPDTPmPDAIGKPAAAPAPK
  258-  299 (68.33/29.00)	PQLGQQTGISTMNgPTINTK.LDDKKDAS.SDKTPRSATMPKPK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.86|      27|     147|      65|      94|       2
---------------------------------------------------------------------------
   65-   94 (38.42/32.34)	ATRDAFEGRLKtmSGLEFIvGEEPAISAPG
  217-  243 (51.43/31.14)	AAEEAFMVHMR..YGGEYI.DENPITGRPG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01299 with Med6 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EYIDENPITGRPGEFHLSSTGRKPIPPPQLGQQTGISTMNGPTINTKLDDKKDASSDKTPRSATMPKPKRRKSKMSTGTPAAS
2) RPSTGHVYQLPTTQPTARPKGIESKPDTPMPDAIGKPAAAPAPKNDEVSLERAAEE
231
165
313
220










Molecular Recognition Features






MoRF SequenceStartStop




1) DKTPRSATMPKPKRRKSKMSTG
2) KLDDKKDA
287
277
308
284