<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01248

Description BnaCnng60400D protein
SequenceMGDGALIVAVAIKGNNSKTKGVVRWALQQFASQEHVVFKLLHVQPRDSISVSTARKYSTTTVYKKDVDRKTREMLLPSRDMFAHREVQMDIMVLESDDVADAIYKAVQDHGISELVIGASSSVIFSWKLKRSNLSSKISDVTPRFCTVHVISKGKLLNVRKSDIDIETSITDDRSENQFTSSSHSGSVSSTSSHQFSSTPLLFQRMQALSTVNQKVGTKIGTNNNIDTHHNRTASLDVDTKMLNQKGFYRTNSSGIGYGGSDIQGRRRSYTDEGSSSSCSSDPTSSSSQVNKDFELEKLKIELRHIKGMYAVAQGEVMDASKKVQDLNQRRSEEATRLKNLTIREEDADEVVEMERERQEQAENEAELVRRCVERETEDKLEAQARAEEVRKEKQRLEDALEGGPLQRQQYMKFEWDEIVQATSSFSDELKIGMGGYGSVYRCNLHHTTVAVKVLHSDKSNLTKQFHQELEILSKIRHPHLLLLLGACPDHGSLVYEYMHNGSLEERLMTRRPNSDAPQPPLRWFERFRIAWEIASALYFLHTNEPRPIVHRDLKPANILLDRNNVSKIGDVGLSKMVNLDPSHASTVFNQTGPVGTFFYIDPEYQRTGVVTPESDIYAFGIILLQLATARSAMGLAHSLEKALRDQTGKFSEILDKTAGDWPVKEAKEMVMIGLRCAEMRKLDRPDLGKEILPVLERLKDVSCNARNMFTETLVDHNHHAPGHFYCPITKDVMDNPCVASDGYTYEKKAIMEWLEKNHKSPMTDAPFPNQTLLPNQSLLSAIKEWRSHLIK
Length792
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.545
Instability index41.00
Isoelectric point6.75
Molecular weight89497.28
Publications
PubMed=25146293

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01248
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.32|      26|      97|     162|     187|       1
---------------------------------------------------------------------------
  162-  187 (45.24/30.15)	SDID.IETSITDDRSENQFTSSSHSGS
  261-  287 (42.07/27.50)	SDIQgRRRSYTDEGSSSSCSSDPTSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.30|      23|     373|     210|     233|       2
---------------------------------------------------------------------------
  210-  233 (37.84/27.96)	STVNQKVGtKIGTNNNIDTHHNRT
  586-  608 (44.46/28.37)	STVFNQTG.PVGTFFYIDPEYQRT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.16|      24|      26|     324|     349|       4
---------------------------------------------------------------------------
  319-  344 (33.68/28.69)	DASkkVQDLNQRRSEEATRLKNLTIR
  347-  371 (34.47/21.42)	DAD.eVVEMERERQEQAENEAELVRR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01248 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SGIGYGGSDIQGRRRSYTDEGSSSSCSSDPTSSSSQVNKDF
2) VMDASKKVQDLNQRRSEEATRLKNLTIREEDADEVVEMERERQEQAENEAELVRRCV
254
317
294
373










Molecular Recognition Features






MoRF SequenceStartStop




NANANA