<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01242

Description BnaAnng23030D protein (Fragment)
SequenceLSDISDHHSCRWLDLMEGYSNWKPNEQGRDSLANNANDWRSTHEFDLRKRVIIAIVEKLKICFPKHSQNDINNTACKFEGKIYGMATDKSDYLRKISEKIMVFDQRFKSVQSGSLVNEPNTTQDPAAQALNQGPSLPTSLSYTQTPTSQQWFPQNNIHQSSGFSNQVPITVSAAQSQNIQMGEGVHSHLLSNSQRQIQGRKQFCTQPQQQLQSCNDMFQSQVNQQLLKENTHHLQPPYMQQHQHQQSLLKQPIHQHLPHHTSLSTIQQSFPQTSVHSSLTSSGQQNSQYLPRHMYVQSQEQKQQEYEQLISQLMNGQDTQQNHLTSQQNNWEQRGAFTVSPSQQNNIVSFQEMGQQSSNPHTMYLQQHLYSHSNNASSSLASQQQTYMPGGQSGNFNVYESSLLGTQGQGLGQSQPMMLQQYQQPQNRILQQHLDDTQRLHEAVSLHQTQNVANQQNQPYQLQRAPTENPYINASGGDWQEETYQKIKALKEKYLPVLSTLLQKVSEKLGEVDSLPQQNTQNEPIEKLRVGKSMLELVVMFLNVHRDNISESHRDKFSLYEEQVLRFTKNRQTLTQRPMQHQQSPSGHNQHSNISLPQSCMFHEKQFHHLNQLLHSQQQQQPQTNQQQPQIQNYSSPQFVDHQILSTAFHNTGTSSQSLAPSPNLVDLEKPIYVESLVSHDYQLQTAPQEQPIDRLIEAVHSVTTTPPLDIISQTGSYKRLSSLESEADSTASSGSKAQKIEPACTLLQEIKDINGSLVETVVNICNEEVYPSEVTPGTIVTCSYSPVALSDTFEAHYKSGHISQIQPLRLLVPVNYPSSPILLLEKLSYDSSLHKYDDLSARTRSRFGLSMKEFSEPMSLKEIAQAWDVCARETMAEYAEQHGGCTFSSNYGHWDPV
Length898
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.807
Instability index65.20
Isoelectric point6.15
Molecular weight102069.96
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01242
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     332.12|      42|      42|     289|     330|       1
---------------------------------------------------------------------------
  201-  245 (50.23/14.76)	KQFCTQ..PQQ.QLQScNDMF.QSQVNQQllkENTHHLQP.PYMQQHQHQ
  246-  275 (36.81/ 8.93)	QSLLKQ..PIH.QHLP.HHTSLSTIQQSF................PQTSV
  276-  320 (62.09/19.91)	HSSLTSsgQQNsQYLP.RHMYVQSQEQKQ...QEYEQLIS.QLMNGQDTQ
  321-  359 (49.51/14.44)	QNHLTS..QQN.NWEQ.RGAFTVSPSQQ.......NNIVSfQEMGQQSSN
  380-  412 (37.35/ 9.16)	...LAS..QQQ.TYMP.GG...QSGNFNV...YESSLLGT.Q...GQGLG
  413-  438 (37.01/ 9.01)	Q............SQP...MMLQ...QYQ...QPQNRILQ.QHLD..DTQ
  597-  637 (59.13/18.62)	PQSCMF..HEK.QFHH.LNQLLHSQQQQQ...PQTNQQQP.Q.IQNYSSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.34|      15|      18|     677|     694|       2
---------------------------------------------------------------------------
  677-  694 (24.34/22.39)	LVSHDYQLQTAPqeqPID
  696-  710 (25.00/13.78)	LIEAVHSVTTTP...PLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      83.35|      18|      18|     111|     128|       3
---------------------------------------------------------------------------
  111-  128 (30.65/16.50)	QSGSLVNE.PNTTQDPAAQ
  132-  149 (29.69/15.71)	QGPSLPTS.LSYTQTPTSQ
  159-  177 (23.01/10.22)	QSSGFSNQvPITVSAAQSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.92|      15|     284|     545|     559|       9
---------------------------------------------------------------------------
  545-  559 (27.57/18.83)	HR.DNISESHRDKFSL
  835-  850 (22.35/13.91)	HKyDDLSARTRSRFGL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01242 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EYEQLISQLMNGQDTQQNHLTSQQNNWEQRGAFTV
2) GSLVNEPNTTQDPAAQALNQGPSLPTSLSYTQT
3) QGLGQSQPMMLQQYQQPQNRILQQHLDDTQRLHEAVSLHQTQNVANQQNQPYQLQRAPTENPYINASGGD
4) QVNQQLLKENTHHLQPPYMQQHQHQQSLLKQPIHQHLPHHTSLSTIQQSFPQTSVHSSLTSSGQQNSQYLPRHMYVQS
5) SQQNNIVSFQEMGQQSSNPHTMYLQQHLYSHSNNASSSLASQQQTYMPGGQSGNFNVYESSLLGTQ
305
113
409
221
342
339
145
478
298
407










Molecular Recognition Features






MoRF SequenceStartStop




1) YLPRHMYV
289
296