<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01241

Description BnaCnng46930D protein
SequenceMETELHRKRYENPPPTLILLIGNACSTFFLEKKFPRKPDFEIGDEMKPSQDSLDDWRDYFRRGDSDIFGIINHAIILAAAYFPDEFKSRRDGIAQLLFSRNASRSCIGCGREDNHETVGGSGGRDDSGGAGGGEEDEKKVNDNEIVVDEVVRIRDILLNKEDESNSALFHSLRKLESMSLSVDLLKGTEIGKAVNGLRRHGSDKIRELAKALFAEWKELVDQWMNSTNEIAGDEGTPESANYSVVDEAEAFPSPPHDLDFLAPEPTGFELSQILDGLDCDGNPRHSVEPKRKSMRRPEGTREPNLVGRYNNNQQTRREEVDARPMKHSATVFDEPRRQPKQTREQMVHPIQRKPIVIPEQKRNSQQDKLKAMDPDAKFEFAKRKLQESYQQHDKAKRQRTIQVLETIPKQGKVQKPQFKRPMRR
Length424
PositionUnknown
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.958
Instability index50.73
Isoelectric point6.42
Molecular weight48472.83
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01241
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     164.98|      47|      49|     314|     362|       1
---------------------------------------------------------------------------
  278-  308 (24.02/10.88)	.....DCDGNP.RHSV....EPKRKsmrrPEGTRE....PnlVGR..............
  314-  362 (76.16/61.55)	QTRREEVDARPmKHSATvFDEPRRQ....PKQTREQMVHP..IQRKPI....VIPEQKR
  366-  412 (64.79/42.81)	QDKLKAMD..P...DAK.FEFAKRK....LQESYQQHDKA..KRQRTIqvleTIPKQGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     125.10|      30|     166|      54|      83|       2
---------------------------------------------------------------------------
   54-   83 (52.60/33.84)	DDWRDYFRR..GDSDIFGIINHAIILAAAYFP
  197-  220 (27.86/14.70)	......LRR..HGSDKIRELAKALFAEWKELV
  221-  252 (44.64/27.68)	DQWMNSTNEiaGDEGTPESANYSVVDEAEAFP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01241 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) CGREDNHETVGGSGGRDDSGGAGGGEEDEKKVN
2) SQILDGLDCDGNPRHSVEPKRKSMRRPEGTREPNLVGRYNNNQQTRREEVDARPMKHSATVFDEPRRQPKQTREQMVHPIQRKPIVIPEQKRNSQQDKLKAMDPDAKFEFAKRKLQESYQQHDKAKRQRTIQVLETIPKQGKVQKPQFKRPMRR
109
271
141
424










Molecular Recognition Features






MoRF SequenceStartStop




1) DAKFEFAKRKLQESYQQH
2) KQGKVQKPQFKRPMRR
3) WRDYFRR
375
409
56
392
424
62