<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01240

Description BnaCnng42950D protein
SequenceMCKKREESITLAIDRDKESQNALKWTVDNLVSKGQTVTLLHVKLKQSSSLPSGNKSSDDGAELFLPFRCFCARKDVLCQDVIVEDISAAKGILDFVQKNAVETLVLGASKMTLLRRFKAPDVSSTVIKRAPSFCTVYSISKGKISSMKSSTSSLPSSTMRQRVQTIKSNMNVERRQSTMQRTHDEIEIKSPFMRRGYEGTYQPSMMDSDISFVSSGRPSVDLMFPSFHDHAAVPHLSLISDYEENRISYATSCSSDKQSIDIGSSYAAFSSSSLGTGRQSCSLSRQDEMEAEMRRLKMELKYTMDMYNTACKEAISAKNAATELHKWKADKELKLEEVRLAKEAAMQMAESEKEKSRVVMETAMASHRIAEFEAQKRKHIETAKEKKRATSSLGKNDFRYRKYIIEEIEEATEDFSPSRKIGEGGYGPVYKGSLDYTQVAIKVLRPDAAQGRSQFQQEVEVLTCMRHPNMVLLLGACPEYGCLVYEYMANGSLEDCLFRRGNSPFLSWQLRFRIAAEIATGLHFLHQMKPEPLVHRDLKPGNILLDKHFVSKISDVGLARLVPPSVADTVTQYRMTSTAGTFCYIDPEYQQTGMLGTKSDIYSFGIMLLQILTAKPPMGLTHHVEKAIQNGKFVEMLDPIVPDWPVDEALVAAKLALKCAELRRKDRPDLGHAVLPELNRLRALAEEIKPSINFCRSHRPSPNTTMNRNHCHIQRPVATTSLYV
Length724
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.406
Instability index49.82
Isoelectric point8.82
Molecular weight81404.59
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01240
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.53|      17|      17|     143|     159|       1
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  143-  159 (27.81/15.81)	KISSMKSSTS.SLPSSTM
  162-  179 (24.72/13.30)	RVQTIKSNMNvERRQSTM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.70|      31|     345|      90|     137|       2
---------------------------------------------------------------------------
  102-  134 (51.36/63.90)	ETLVlgASKMTL....LRRFKAPDVSSTV.............IKRAPSFC
  648-  695 (41.33/14.93)	EALV..AAKLALkcaeLRRKDRPDLGHAVlpelnrlralaeeIKPSINFC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      70.47|      15|      23|     317|     331|       3
---------------------------------------------------------------------------
  317-  331 (23.96/16.23)	AKNAATELHKWKADK
  341-  355 (23.39/15.66)	AKEAAMQMAESEKEK
  362-  376 (23.12/15.39)	TAMASHRIAEFEAQK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.90|      14|      42|     214|     227|       4
---------------------------------------------------------------------------
  214-  227 (26.53/18.36)	SSGRPSVDL..MFPSF
  254-  269 (19.37/11.37)	SSDKQSIDIgsSYAAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.70|      22|      25|     377|     398|       6
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  377-  398 (36.37/22.98)	RK....HIETAKEKKRATSSLGKNDF
  401-  426 (32.33/19.64)	RKyiieEIEEATEDFSPSRKIGEGGY
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01240 with Med32 domain of Kingdom Viridiplantae
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