<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01237

Description BnaC05g49900D protein
SequenceMFILLPKPTKVVACIYVLVSFPSEHIPFSLQMDSVPQQRRSEQFEKLKQFKAAVERMIQFLSVSKSNIIPALKDKVAIYEKQIIDLVNMLRPRNPVQQGQLPESQMQPIQQQSSRGMFSSQGQQSQNQPSQQQMMPLQSHRQQLRLQEQSNLLQQDVQQRLQSSGQVTGSLLPPQNVGDQRRQLYQSQRTLPEIPSAFLDSMAQTESGYGVDWQEEIFQKIKTLKDAYFSDLTEIDQRVGAKLQQYSLPQQQRSEEFEKLKRVKTMLERMIQIISVSKRNIMPALKEKVAFYEKQIILFVNVYKGSKPVQQEQLPESQMQPMQQQSSPHGNLAVNRGDWRALHPPGSRQKNVNTLLETLKKHVPYSGEEGIEELMRIAVSFEELIFNTAKDQMDYFCKISLKMQSMEEGS
Length410
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.626
Instability index75.16
Isoelectric point9.16
Molecular weight47346.81
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01237
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     425.18|     108|     212|      30|     143|       1
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   30-  143 (189.09/97.97)	LQMDS..........................VPQQRRS.EQFEK.LKQFKAA.VERMIQFLSVSKSNIIPALKDKV.AIYEKQIIDLVNM.LRPRNPVQQGQLPESQMQPIQQQSsrgmfSSQGQQSQNQPSQQQMMPLQShRQQ
  146-  245 (51.15/17.30)	LQEQSnllqqdvqqrlqssgqvtgsllppqnVGDQRRQlYQSQRtLPEIPSAfLDSMAQTESGYGVDWQEEIFQKIkTLKDAYFSDLTEIdQRVGAKLQQ.............................................
  247-  350 (184.94/84.47)	....S..........................LPQQQRS.EEFEK.LKRVKTM.LERMIQIISVSKRNIMPALKEKV.AFYEKQIILFVNV.YKGSKPVQQEQLPESQMQPMQQQS.....SPHGNLAVNRGDWRALHPPGS.RQK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01237 with Med15 domain of Kingdom Viridiplantae
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