<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01235

Description BnaA09g53670D protein
SequenceMDTATQPPQGQPPPVAEKLNPELVQLLNLESVKTRADSLFKAISRILEDFDAYGRTNTSPKWFDILGQYSMVNLELFNIVEEVKKVSKAFVVLPKNVNAENAQILPVMLSSKLLPEMEADDNVKREQLLQGVQNLPVPMQIEKLKERMTLIAQACENAEKTLADTRKAYGFGARQGPSMLPTMDKVQVAKIQEQESMLRAAVNDGAGTRLPPDQRQITTALPPHLVDVLFVNDAGKNALPVASNNINSQGNMMQVSGTQFMGRSAASPSNANFDTTRSPLPYSNSPQSAGMLNAPSPQQQQQLQQQQRSKLMQLPQHQQQLLAQQQQLRQSSMQQSQMPSLHDLQAQQKFQSLHGQQHQMPYSQSMGHQQYQARQLSGGHIQHGMSQGQLNPAMLNRQLNQFSGGANSAMFTSAQGSPSSQMIPNMSSMQSQTLNPRMQQYGVSGTNAQRGHASQMLGDQMFNNSGMMQTQQSQQPQQQQQQQQQQQGAYGNMQTNQQNLQPNMLQNPQQRHQNPQ
Length516
PositionHead
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.04
Grand average of hydropathy-0.776
Instability index63.29
Isoelectric point9.16
Molecular weight57388.00
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01235
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     140.90|      22|      23|     466|     487|       1
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  290-  308 (31.64/ 7.18)	GML....NAPSPQQQQQLQQQQR
  310-  331 (29.76/ 6.28)	KLMQL.PQHQQQLLAQQQQLRQS
  466-  487 (45.98/14.06)	GMMQT.QQSQQPQQQQQQQQQQQ
  491-  513 (33.51/ 8.08)	GNMQTnQQNLQPNMLQNPQQRHQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.85|      17|      21|     335|     355|       2
---------------------------------------------------------------------------
  335-  352 (28.22/ 8.94)	QSQMPSLHDLQAQQkFQS
  357-  373 (31.63/11.49)	QHQMPYSQSMGHQQ.YQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.27|      22|      25|     374|     395|       3
---------------------------------------------------------------------------
  374-  395 (43.41/17.13)	RQLSGGHIQHGMSQGQLNPAML
  441-  462 (35.86/13.08)	YGVSGTNAQRGHASQMLGDQMF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.50|      22|      28|      96|     117|       4
---------------------------------------------------------------------------
   96-  117 (38.96/21.24)	NVNAE....NAQILPV.MLSSKLLPEM
  122-  148 (29.55/14.52)	NVKREqllqGVQNLPVpMQIEKLKERM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.75|      16|      28|     202|     217|       5
---------------------------------------------------------------------------
  169-  188 (16.84/ 6.25)	YGFGArqGPSMLPtmDKVQV
  202-  217 (29.96/16.47)	VNDGA..GTRLPP..DQRQI
  231-  246 (22.95/11.01)	VNDAG..KNALPV..ASNNI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.89|      33|     147|     247|     288|       6
---------------------------------------------------------------------------
  247-  288 (47.15/44.93)	NSQGNmmQVSG..TQFMGRSA.ASPSnANFdttrspLPYSNSPQS
  396-  431 (53.73/27.45)	NRQLN..QFSGgaNSAMFTSAqGSPS.SQM......IPNMSSMQS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01235 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LPVASNNINSQGNMMQVSGTQFMGRSAASPSNANFDTTRSPLPYSNSPQSAGMLNAPSPQQQQQLQQQQRSKLMQLPQHQQQLLAQQQQLRQSSMQQSQMPSLHDLQAQQKFQSLHGQQHQMPYSQSMGHQQYQARQLSGGHIQHGMSQGQLNPAMLNRQLNQFSGGANSAMFTSAQGSPSSQMIPNMSSMQSQTLNPRMQQYGVSGTNAQRGHASQMLGDQMFNNSGMMQTQQSQQPQQQQQQQQQQQGAYGNMQTNQQNLQPNMLQNPQQRHQNPQ
239
516










Molecular Recognition Features






MoRF SequenceStartStop




NANANA