<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01232

Description BnaC05g49890D protein
SequenceMRTCVILHNMIVEDERHRYTLADTSEFESGESSRSAKEHLMDNNNWRLSIPNGESAAMNNGEWRKQLPPDSRQKIVNKIMETLSRHLPNSGPEGIIDLRRIAARFEEKIFSCAVNQTDYLRKISMKMLTMETKSQNAAGSSSTTPDANNTTSMDSIPNNQGQLLPGTLPNNQSQAPQPLMSQTIQSNTASGITGSTGLPSSMPPVSSIANNSVVNQNSSMQNVAGLLQDSSGQHGVSSNMLSGSQRQMLGRPPHTMSSQQQQPQGAQYLYQQQQLLRQNFQAGNVPNPNSLLPTHIQQQQQQQNVLQPNQMHSSQQPASTTSATQPSAVSSAPIQGLHTNQQSSPQLSSQQTTSQTILRQQQSSLLRQHPQSQQSSGIHQQQTSLPQQSISPQQQAQMMRQQAASGSGIQQKQMMGQHKQHPPAQQQLMSQQNSLQATTQQPLGTQSNVAGLQQPQQQLLSSQVGNSSLQTNQQSLHMLSQPTAALQRTHQAGHGLYPSQGQQSQNQPAQQQMVPLQSHRQQLQQPNLVQQDVQQRLLSSGQVAGSLLPPQNVVDQQRQLYQSQRTLLEMPSSSLDSTAQTESGNAVDWQEEVFQKIKIMKDAYLPDVTEIYQRVIAKLQQMDSLPQQQRSEQFEKLKQFKTMLERMMQFLSVSKSSIMPPLKNKVAIYEKQIIDFVTAHRPRKPVQQGQLPQSQMQPMQQQSSQNGNHSHDGQANPQMQSMSMPRAQQSSLENVQNNVLSSRPGASAPQQNIHSSVPASSLESGQGNALNNGQQVAMRSIQQNTYQQVNNTSASAQSGLSTLQPNVNQTQLSSGLLQQQKDQQMTQQQQLKQQFQQRQMQQQQQQLLQKQRLMQQHQEQLQARQQVAQNDLKPGSQLPVTSPQLLPGSSPQMTQQHSSPQIDQKNMMSSVNKMGTPVQPANSPFVVPSPATPVAPSPMQVDSEKPSGASSLSMGNTARQQATGVQGVVQSIAFGTPGISASPLLQEFTSPEGNNLNPLTSTFGKPSATELPIERLIRAVKSISPQSLSSAVSDIGSVVSMVDRIAGSAPGNGSRASVGEDFVAKTKCRLQARNFMAQEGMTPTKKMKRHATAMPLSVYSLGGSVGDNCKQFACSETSDLESTATSVGKKARTETEHALLEEIKEINQRLIDTVVEISDEEDATDSSEGATASKGCEGTTVRFSFIAVSLSPALKAHFSLTQMSPIQPLRLLVPCSYPNGSPSLLDKLPVETSKENEDLSSKAVARFNILLRSLSQPMSLKDIATTWDACARTVICEYAQQFGGGTFSSKYSTWEKFVAAS
Length1301
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.03
Grand average of hydropathy-0.707
Instability index69.48
Isoelectric point9.10
Molecular weight142350.51
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01232
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            10|     686.21|      75|      75|     287|     361|       2
---------------------------------------------------------------------------
  198-  279 (71.60/15.38)	LPSSMPP..VSsiannsvVNQ....NSSMQNV...................AGLL........Q..DSSGQH.......GVSSNmlSGSQRQMLGR.PP........HTmsSQ.Q......Q.QP...QgaqyLYQQQQ....LLRQ..N
  287-  361 (134.34/35.99)	NPNSLLP..TH.......IQQ....QQQQQNV...................LQPN........Q..MHSSQQ.......PASTT..SATQPSAVSSAPIQ.....GLHT..NQ.Q......S.SP...Q....LSSQQTTSQTILRQ..Q
  369-  440 (74.89/16.46)	HPQSQQS..SG.......I.......HQQQTS...................L.PQ........Q..SISPQQ.......QAQ.....MMRQQAASGSGIQqkqmmGQH....K.Q......H.PPaqqQ....LMSQQNSLQATTQ....
  441-  524 (54.93/ 9.91)	...................QP....LGTQSNVaglqqpqqqllssqvgnssLQTN........QqsLHMLSQ.......PTAAL..QRTHQAGHGLYPSQ.....G......Q.Q......S.QN...Q....PAQQQMVPLQSHRQqlQ
  525-  590 (67.32/13.98)	QPN.LV..............Q....QDVQQRL...................L................SSGQ.......VAG....SLLPPQNVVDQQRQ......LYQ..SQ.RtllempS.SS...L....DSTAQTESGNAVDW..Q
  600-  672 (59.86/11.53)	MKDAYLPdvTE.......IYQrviaKLQQMDS...................L.PQ........Q..QRSEQ...........FE..KLKQFKTMLERMMQ.....FLSV..SK.S......SiMP...P....LKNK....VAIYEK..Q
  681-  727 (60.64/11.78)	RPRK..P...........VQQ....GQLPQSQ...................MQPM........Q..QQSSQ............................N.....GNHS..HDgQ......A.NP...Q....MQ.....SMSMPRA...
  728-  780 (51.61/ 8.82)	....................Q....QSSLENV....................QNN........V..L..SSR.......PGA....SAPQQNIHSSVPAS.....SLES..GQ.G......N.A.........LNNGQ...QVAMRS...
  781-  835 (54.77/ 9.85)	..................IQQ....NTYQ.......................QVN........N..TSASAQ.........SGL..STLQPN.VNQTQLS....sGL.L..QQ.Q......K.DQ...Q....MTQQQQLKQQF......
  839-  907 (56.24/10.34)	...................QM....QQQQQQL...................LQKQrlmqqhqeQ..LQARQQvaqndlkPGSQL..PVTSPQLLPGSSPQ.......MT..QQ.H......S.SP...Q....IDQ.........KN..M
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     334.12|      81|      84|     937|    1020|       3
---------------------------------------------------------------------------
  937- 1020 (125.55/96.70)	SPmQVDSEKpsGASSLSMGNTARQQATGVQGVVQSIAFGTPGI.SASPLLQ.EFTSPEGNNLNPL....TSTF..GKPSATE.LP...IE.......RLIRAV
 1024- 1089 (79.11/49.89)	SP...........QSLS...SAVSDIGSVVSMVDRIAGSAPGNgSRASVGE.DFVAKTKCRLQ......ARNF.mAQEGMT...P...TK.......KMKR..
 1090- 1154 (54.07/30.14)	........................HATAMPLSVYSL.....GG.SVGDNCK.QFACSETSDLEST....ATSV..GKKARTE.TEhalLEeikeinqRLIDTV
 1156- 1231 (75.39/46.79)	...EISDEE..DATDSSEGATASK...GCEGT..TVRFSFIAV.SLSPALKaHFSLTQMSPIQPLrllvPCSYpnGSPSLLDkLP...VE.............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.06|      11|      15|      41|      51|       4
---------------------------------------------------------------------------
   41-   51 (22.94/15.41)	MDNNNWRLSIP
   58-   68 (23.12/15.60)	MNNGEWRKQLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.56|      10|      19|     911|     920|       5
---------------------------------------------------------------------------
  911-  920 (19.93/ 9.91)	VNKMGTPVQP
  927-  936 (19.63/ 9.66)	VPSPATPVAP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01232 with Med15 domain of Kingdom Viridiplantae
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