<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01230

Description BnaC04g51870D protein
SequenceMREAVQKCRELGIQRLRCETDSGLLVKAITSRKPSPELYGIISDIVALISEFELIQFRWIPREKNKAADALAKKALRLETIVLNSTLRAFFLFRPTHWEDFSQRFSVLTTKSLVVRNSKHINPEALTYLASHTSKFLERESKTIPRGEFHALLSSGSILALTSQHHGTSGSALWLPIDLFFEDIMDGTQAAAASAVENLTGASLVKALQAVNSTTWHDAFLALWLAALRLVQRERDPIEGPVPRTDTFLCVLLSVTPLAVANIIEEEESQWIDQSASSPSNQWKEKKGKCRQGLVNSLQQLGDYESLLTPPLSVQSVANQAAAKAVMSISGITNGSGSYENTSMNESASGCSGNMRHLVVEACISRNLLDTSAYLWPGFVNGGTNQVPQGIAGNVSCWSLVMKGSSLTPSLTNSLITTPASSLAEIEKIYEVATTGSEDEKIAAASILCGASLFRGWSIQEHVIIFIVTLLSPQAPANISGSYSHLINCAPFLNVLLVGISPVDCVQIFSLHGVVPVMRYFEK
Length523
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy0.071
Instability index38.10
Isoelectric point6.29
Molecular weight56960.57
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
nucleic acid binding	GO:0003676	IEA:InterPro
RNA-DNA hybrid ribonuclease activity	GO:0004523	IEA:InterPro

GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01230
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.85|      21|     215|      46|      85|       2
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    2-   22 (37.21/37.87)	REAVQKCRELGIQRLRCET...DS
   62-   85 (27.64/15.22)	REKNKAADALAKKALRLETivlNS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01230 with Med33 domain of Kingdom Viridiplantae
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