<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01228

Description BnaA03g55870D protein
SequenceMDLDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMANKCRNCDFGGGGGEVARANGSVHEEEEEEEDDGYDPFAGLFDDEQKSVLEIKERLEDPDLSEEDLVELLQNLDDMEITFQALQETDIGRHVNKVRKHSSNDVRTLAKKLVKKWKETVDEWVKLNPPGDLEPPSLIADEDSPQQRAIRNGNRQQVPDFGYSPVPQNGYSGSSSKNSYVSEPERKPRPVAPPPRRESPSPAKQPSRPIPREKEHKEIDFDSARKRLQQNYRQAENAKKQRTIQVMDIHEIPKPKKGGFFPRRGGSSQGGGGRHW
Length325
PositionUnknown
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-1.063
Instability index68.19
Isoelectric point5.33
Molecular weight36893.44
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01228
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     108.52|      26|      59|     194|     220|       1
---------------------------------------------------------------------------
  194-  220 (44.49/27.36)	PQQRAI.RNGNRQQVPDFGYS..PVPQNgY
  225-  245 (30.90/13.77)	SKNSYV.SEPERKPRP...VA..PPPR...
  255-  281 (33.13/15.50)	PS.RPIpREKEHKEI.DFDSArkRLQQN.Y
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.16|      12|      24|     102|     113|       2
---------------------------------------------------------------------------
  102-  113 (19.74/10.79)	LEIK.ERLEDPDL
  128-  140 (15.42/ 7.17)	MEITfQALQETDI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01228 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) WVKLNPPGDLEPPSLIADEDSPQQRAIRNGNRQQVPDFGYSPVPQNGYSGSSSKNSYVSEPERKPRPVAPPPRRESPSPAKQPSRPIPREKEHKEIDFDSARKRLQQNYRQAENAKKQRTIQVMDIHEIPKPKKGGFFPRRGGSSQGGGGRHW
173
325










Molecular Recognition Features






MoRF SequenceStartStop




1) EKEHKEIDF
2) IQVMDIHEIPKPKKGGFFPRRGG
262
293
270
315