<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01227

Description BnaC09g53680D protein
SequenceMMSNVFDGALSDYSSISVAVKGSIGDTVGGAASRRAVRWAVDNLLPHIDRLVLVHVMPTVTTIPSPSGSKIPVEDLEESVVSMYKQDLRKEFEEVFVPFNKICGSIKVETLLLENDDPAKALLKYISDSEVECLVIGSCSPSFLTRKKGQEMPLMVLGEAPETCEVYVIAKDRVLTKSTNQLSPVKLSSDSSYSFRTPKRAEAHTDPFNRTCSDKTGLAASYILSSASTGIRLGHDEQVRSILGHNIVSTSNMQLNPGANMNTPKWQSNVMYEIAQLRKQVQTTLCMYKQAREELVHKQTQVQSLSYECIKDTKRVISALEKEEMLRKEAEKEKQKHLKAVKEIEEAKSMLAKEFCDRKLAELNALQQALKKQQVMDQLLLSDSRYRKYTKEEIVAATDNFSLSKIIGEGGYGKVYKCSVDHTPVALKVRRPDTIEKKQEFLREISVLSQLRHPHVVLLLGACPDNGCLVYEYMDNGSLDAHISRKKGKPSLPWFIRFKIIYETACGLAFLHNSKPEPIVHRDLKPGNILLDKNFVSKIGDVGLAKLISEEARESVTVYRNSTIAGTLYYLDPEYQRTGTFRPKSDLYAFGIIVLQLLTARHPNGLLFCAEDAVKRGCFGDMLDGSVREWPLAEAEELARIAIQCSQLKCRDRPDLDTQVLPALKRILESAKSKLKTEQAKARPPSHYYCPILKEIMEDPQIAADGFTYEGKAIKAWIQNNQNVSPVTKNRLRHCDLTPNHTLKSAIQEWRSRSGLDLSTTLGSS
Length765
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.349
Instability index45.25
Isoelectric point8.64
Molecular weight85720.64
Publications
PubMed=25146293

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01227
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.12|      32|     203|     187|     219|       1
---------------------------------------------------------------------------
  187-  219 (55.64/44.12)	LSSDSSYSFRTPKRAEAHTDPFN..............RtCS.DKTGLA
  380-  426 (44.48/29.71)	LLSDSRYRKYTKEEIVAATDNFSlskiigeggygkvyK.CSvDHTPVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     141.66|      44|     147|     430|     478|       2
---------------------------------------------------------------------------
  430-  478 (73.15/64.55)	RRPDTIEKKQE.FLREISVLSQL..RHPHVVLLlgaCPDN....GClvYEYMDNGS
  576-  626 (68.51/46.50)	QRTGTFRPKSDlYAFGIIVLQLLtaRHPNGLLF...CAEDavkrGC..FGDMLDGS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01227 with Med32 domain of Kingdom Viridiplantae
Unable to open file!