<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01225

Description BnaC02g46300D protein
SequenceMSARRVDNGLITAIAIDKDKNSQHALKWALENIVVDSPHCVLLHVQPKGISCSLSLIIPNLQYEEHQLFLPFRGFCARKGIMAKEVVLRDSDISNAIVNYITNYSISNIVVGSSAHKSFFKKFKSPDVPTTLLKTAPETCAVFVVSKAKLKKSKSASQAQKHRHRQQDLSSLLYNYDSTSSCDSERQSSLSAQYNNSNSYSSQSYSPRISPPQSLSEFSQSDTENSSYGVVSTMTSYTISQSSTTKGISISSTSMNQHLEAEEALEMLRALSEEKQERHSDIQAAEMAKQLVKMESQKRRLLELQAKLGKQKMTNNVSYRRYSTEDVEEATNGFSDALKIGEGGYGPVYKAVLDYTFVAIKLMKSGITQGLKQFQQEVEVLSSMRHPNMVILLGACPDYGCLVYEYMENGTLEDRLFCKDNTPPLSWRARFRIAAEIATGLLFLHSAKPEPLVHRDLKPANILLDRHFTSKISDVGLARLVPPCGANSVSNYHITAAAGTFCYIDPEYQQTGMLGVKSDLYSFGVVLLQIITAMPAMGLGHRVETAIENNKLSEVLDPKVSDWPEEETLELAKLALQCCEMRKKDRPDLASVLLPALKRLREFAREENEHIQDIPSQISESSKSETLAAVPNSQINKELTWRVREIQEERDRLKMRSHSVPKRSRPPRAQRRQYKGNRWSLMSCAPSKVQWGGLP
Length695
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.428
Instability index53.27
Isoelectric point8.79
Molecular weight77902.94
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01225
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.32|      17|      19|     273|     290|       1
---------------------------------------------------------------------------
  273-  290 (24.53/18.41)	E.EKQERH.SDIQaAEMAKQ
  293-  311 (17.79/ 8.23)	KmESQKRRlLELQ.AKLGKQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.84|      17|      19|     165|     181|       2
---------------------------------------------------------------------------
  165-  181 (30.39/18.16)	RQQDLSSLLYNYDSTSS
  186-  202 (30.45/18.20)	RQSSLSAQYNNSNSYSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.52|      34|      57|     534|     569|       3
---------------------------------------------------------------------------
  534-  569 (54.26/41.87)	MPAmgLGHRVETAIENNKLSEVLDPKVSDWPEEETL
  594-  627 (56.26/36.25)	LPA..LKRLREFAREENEHIQDIPSQISESSKSETL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.46|      18|      20|     204|     223|       4
---------------------------------------------------------------------------
  204-  223 (24.43/23.08)	SYSpRISPPQSLSeFSQSDT
  227-  244 (32.03/18.70)	SYG.VVSTMTSYT.ISQSST
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01225 with Med32 domain of Kingdom Viridiplantae
Unable to open file!