<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01224

Description BnaA09g56710D protein
SequenceMLRQHQSSLLRQHPQSQQASGIHQQQTSLPQQQPISPLQQQQAQMMRQQAASGSGIQQKQMMGQNLVGDMQQQHQQRLLNQQNNILNMQQQKQQVPSQQQLMSQQNSLQTTHQQPLGTSHSNVTGLQQQQQQLLSNSSLQTNQQSVQHMLSQPTVGLQRAHQAGHGVFSSQGQQSQNQMIPLQSHHQQLGLQQQQPNLLQQDVQQRLQSSGQVTGSLLPPQSVVDQQRQQQLYQSQRTLPEMPSSSLDSTAQTESANGVDWQEEVYQKIQTMKEAYLPDLSEINQRVGAKLQQQDASLPQQQRSEQFEKLKQFKNMLDRMIQFLSVPKINIMPALKDKVANYEKQIINFLNNHRPRRPLQQGQMQQQSGQNGQEQSHDSQANTQMQSMSMAGSVPRAQQSSLANMQNNVLSSRPGVSAPQQSIPASSLESGKGNAQQLKPGSQLPATSPQLLPGASPQMTQQHSSPQVDQKILMSSVNKMGTPLQPAHSPFVVPSPSTSLAPSPMQVESEKQPGAMGNTARQQQSVVQSIAIGTPGISASPLLQELTSPDGNNLNQSAAELPIERLIRVVKSISPQSLSSGVSDIRSVVSMVDRIAGSAPGNGSRTSVGEDLVAMTKCRLQARNLMTQEGMTASKKMKRNTTAMPLSVSSLGGSVGDNYKQFACSETSDLESTATSVGKKARTEKEHALLEEIKEINQRLIDTVVEISDDEDAADVSEGAIASKGCEGTTVRFSFKAVSLSPALKAHLSSTQMSPIQPLRLLVPCSYPRGSPSLLDNLPVETSKEKEDLSSKAMARFNILLRSLSQPMSLKDIAKTWEACARTVICEYAQQFGGGTFSSKYGTWEKFVAAS
Length851
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.03
Grand average of hydropathy-0.672
Instability index72.71
Isoelectric point9.14
Molecular weight93186.65
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01224
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     536.27|      97|      97|      13|     109|       1
---------------------------------------------------------------------------
    2-   87 (136.47/44.17)	................LRQH..QSSLlrQ..........HPQS....QQASGIHQ.........QQTSLPQ........................QQ....P.ISPLQ..QQQAQMMRQQAA...SGSGIQ....QK.QMMGQ.NLVG.DMQQQHQQRLLNQQNNILN
   88-  181 (120.76/38.06)	MQQQKQQVPSQQQ...LMSQ..QNSL..Q........ttHQQP....LGTS..HS.........NVTGLQQ........................QQqqllS.NSSLQtnQQSVQHMLSQPT.....VGLQ....RA.HQAGH....G.VFSSQGQQ....SQNQMIP
  182-  284 (83.34/23.50)	LQSHHQQLGLQQQqpnLLQQdvQQRL..QssgqvtgsllPPQSvvdqQRQQQLYQ.........SQRTLP.........................EM....P.SSSL...DSTAQ...TESA...NGVDWQeevyQKiQTMKE.AYLP.DLSE......IN.......
  285-  411 (95.82/28.35)	.....QRVGA..K...LQQQ..DASL..P.........qQQRS....EQFEKLKQfknmldrmiQFLSVPKinimpalkdkvanyekqiinflnnHR....P.RRPLQ..QGQMQQQSGQNGqeqSHDSQA....NT.QMQSM.SMAG.SVPRAQQSSLANMQNNVLS
  412-  501 (99.88/29.93)	...SRPGVSAPQQ...SIP...ASSL..E........sgKGNA....QQLKPGSQ.........LPATSPQ........................LL....PgASP........Q.MTQQHS...SPQ.VD....QK.ILMSSvNKMGtPLQPAHSPFVVPSPSTSLA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.97|      11|      44|     526|     538|       2
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  526-  536 (19.94/10.27)	VVQSIAIGTPG
  591-  601 (18.03/ 8.22)	MVDRIAGSAPG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     181.96|      58|      98|     629|     686|       3
---------------------------------------------------------------------------
  510-  610 (43.07/18.70)	....EKQ...............................PGaMGNTARQQQSvvqsiaigtpgISAS..............................PL.LQELTSPDGNNLNQSAAelpierlirvvksispqslsSGVSDIRSvvsmvdriagsapgngSRTSVGE
  617-  679 (92.45/48.16)	KCRLQAR..........................nlmtqEG.MTASKKMKRN...........TTAM..............................PLSVSSLGGSVGDNYKQFAC....................SETSDLES................TATSVGK
  680-  793 (46.45/20.72)	KARTEKEhalleeikeinqrlidtvveisddedaadvsEG.AIASKGCEGT...........TVRFsfkavslspalkahlsstqmspiqplrllvPCSYPRGSPSLLDNLPVETS....................KEKEDLSS................KA.....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.06|      11|     131|     564|     574|       4
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  564-  574 (17.29/15.91)	ERLIRVVKSIS
  698-  708 (17.77/16.60)	QRLIDTVVEIS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01224 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MLRQHQSSLLRQHPQSQQASGIHQQQTSLPQQQPISPLQQQQAQMMRQQAASGSGIQQKQMMGQNLVGDMQQQHQQRLLNQQNNILNMQQQKQQVPSQQQLMSQQNSLQTTHQQPLGTSHSNVTGLQQQQQQLLSNSSLQTNQQSVQHMLSQPTVGLQRAHQAGHGVFSSQGQQSQNQMIPLQSHHQQLGLQQQQPNLLQQDVQQR
2) QIINFLNNHRPRRPLQQGQMQQQSGQNGQEQSHDSQANTQMQSMSMAGSVPRAQQSSLANMQNNVLSSRPGVSAPQQSIPASSLESGKGNAQQLKPGSQLPATSPQLLPGASPQMTQQHSSPQVDQKILMSSVNKMGTPLQPAHSPFVVPSPSTSLAPSPMQVESEKQPGAMGNTARQQQSVVQSIA
3) VDQQRQQQLYQSQRTLPEMPSSSLDSTAQTESANG
1
345
224
206
531
258










Molecular Recognition Features






MoRF SequenceStartStop




NANANA