<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01221

Description BnaA03g55180D protein
SequenceMKPPQSASLDRWRDYFRRGGSDIFEIIDHAIMVAATDCPNKFKSRRDKIAELLFSCRVTRCNGCHHSSELSLPGEEEAVDGSKESKVNSSRGDNNQIIVGGYDCDDDDDDDEAEALSDAIEEFSVVFKEVVRIKEIFLNKDDEPHSVILEALRKLKLMSLDVDVLKSTEIGKAVNGLRKHGSDKIRQLAKTLIAEWKELVDQWVNTTKEIAGGAEGTPESANPSVVDEEEEEVFPSLPYGVDIFTPEANGFEMLNGDFFDSLDFDGNPCNSGEYNTSREDQRRPQKRRPEGTQMRIQKPSPADGTRRPLNQRMKNEVGSVHKSESPMIQRRKPPQEKLKGLDADAKFEFAKRKLQESYQQHDKAKKQRTIQVLETIPKQGSAAQKPQLKRPGMNNRNWANGRK
Length403
PositionUnknown
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.905
Instability index47.74
Isoelectric point5.73
Molecular weight45546.46
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01221
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.17|      23|      23|     279|     301|       1
---------------------------------------------------------------------------
  279-  301 (42.66/22.20)	EDQRRPQKRRPEGTQMRIQKP.SP
  303-  326 (36.51/18.17)	DGTRRPLNQRMKNEVGSVHKSeSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.21|      14|      19|     121|     139|       2
---------------------------------------------------------------------------
  121-  134 (21.93/22.80)	EEFSVVFKEVVRIK
  143-  156 (22.27/ 8.97)	EPHSVILEALRKLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.36|      15|      18|     330|     346|       3
---------------------------------------------------------------------------
  330-  346 (17.51/21.55)	RRKpPQEKLKGLDaDAK
  351-  365 (26.85/18.14)	KRK.LQESYQQHD.KAK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.80|      20|      25|     217|     239|       5
---------------------------------------------------------------------------
  217-  239 (30.86/21.70)	TPESANPSVVDeeeEEVFPSLPY
  245-  264 (36.94/19.04)	TPEANGFEMLN...GDFFDSLDF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01221 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DGNPCNSGEYNTSREDQRRPQKRRPEGTQMRIQKPSPADGTRRPLNQRMKNEVGSVHKSESPMIQRRKPPQEKLKGLDADAKFEFAKRKLQESYQQHDKAKKQRTIQVLETIPKQGSAAQKPQLKRPGMNNRNWANGRK
265
403










Molecular Recognition Features






MoRF SequenceStartStop




1) AKFEFAKRKLQESYQQH
2) IIVGGY
3) LDRWRDYFRR
4) QKPQLKRPGMNNRNW
5) RTIQVLETIPKQ
345
97
9
384
368
361
102
18
398
379