<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01219

Description BnaA09g56720D protein
SequenceMDNNNWRPDLPNGDPSMDSGDWRSQLPPDSRQKIVNKIMETLKKHLPHSGTEGVNELRRIAARFEEKIFSGAVNQSDYLRKISMKMLTMDSKSQNPTGSSSSIPAANNVSSMDIKPNIQGHLLPGTLPNNQSQAPPQPLLSQPMQSNTASGMTGSTALTNNTNVTSVVNQNPMHSFFTSSSYSSSFSSRIFSQGMFSTFNNNSNQICCSPIKCNSLAFQHLPQL
Length224
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.636
Instability index52.47
Isoelectric point9.10
Molecular weight24566.24
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01219
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.76|      35|     103|       3|      40|       1
---------------------------------------------------------------------------
    3-   40 (63.55/39.31)	NNNWRPDL.PNGDPSMDSG...DWRSQLPPdsrQKIVNKIME
  107-  145 (56.21/28.19)	NNVSSMDIkPNIQGHLLPGtlpNNQSQAPP...QPLLSQPMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.65|      17|     103|      76|      95|       2
---------------------------------------------------------------------------
   57-   74 (23.06/16.75)	LRRIAARFeEKIFSGAVN
   79-   95 (28.59/15.30)	LRKISMKM.LTMDSKSQN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01219 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDNNNWRPDLPNGDPSMDSGDWRSQLPPDSRQKIVNKIMETLKKHLPHSGTEGVNELRRIA
2) RKISMKMLTMDSKSQNPTGSSSSIPAANNVSSMDIKPNIQGHLLPGTLPNNQSQAPPQPLLSQPMQSNTASGMTGSTALTNNTNVT
1
80
61
165










Molecular Recognition Features






MoRF SequenceStartStop




1) WRPDLP
6
11