<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01218

Description BnaA09g51930D protein
SequenceMQRYHPANCTSAVNNSATGGGSSGRSDSSSIGNYSLNSRHNFFLFYCRRPPPLTPYKLKCEKDGLNSRLGPPDFHPPTATSPEENLTKEYAQSGYKETVDGLKEADEIILTHFHTFSKPVVLKCKEAVRKCFRAINESRALKRKAGQVYGVPLSGSLLCKPGFPELRSCGEETKKKWIESLSQQHKRLRSLADNIPGYKRKTLFEVLIRNNVPLPRATWFIKVTYLNQVRPSSGSILSGTPDKTQITRCEQWTKDVVDYLQYLLDELLSRNNSYPSQQTRDRSPQMLYTGSIQKISPASASLYGEETSLHFKWWYMVRLLQWHLAEGLLLPNLIVDWVLRLLQEKEVFETLQLLLPIVYSVLESIVLSQTYVQNLVAIAVRFIQEPAPGGSDLVDNSRRAYTLSALTEMIRYLVLAAPDTFVASDCFPLPPSIAASYENLEKLRSNSAEISTQFQGRGVDSRFEFLSFDYTISTVQRSADDLAKIASAGYPQHNGAKAVQALDKALSDGDIRAAYGYLFKDLCNGAVEETWIAEVSPCLRTSLRWIGAISASFVCSVFFLIEWATCDFRDFRDGVPKDIKFSGRRDCSFSVSLDSQNKNHVGRRQRKNGLRYLSELLNDVLLIDSLSQQHKRLRSLADNIPGYRRKTLFEVLIRNNVPLLRATWFIKVTYLNQVRPSTAAISSGTPDKTQNSRCEQWTKDVIEYLQYLLDELLSRNSSYPSQQTRDRSPQMLYAGSMQKISPASSSLYGEETSLHFKWWYMVRLLQWHHAEGLLFPYLIVDWVLRLLQEKDVFEILLLLLPIVYVFLESIVLSQTYVQNLVAIAVRFIQEPAPGGSDLVDNSRRAYTLSALTEMIRYLVLAAPDTFVASDCFPLPPSIAACGPNDVSYASKAYENLEKLRSNSAEISTQFQGRGVDSRFERDCSPVHLVIQLLKQKSLGGEFAARRGQNHRSNFLGVSKPSGSMDAFESPGPLHDIIVCWIDQHEVHRGGAKRLQLLVFELIRSGIFNPVAYVRQLILSGMIDVIQPAVDLERRMRHHRILKQLPGCFVHATLEEAQFLGGYKLSEAVRTYSNERRLLLRELLVGKGKHVNTLALSDQKSKKKSTSFPLVDLPRTFDAMGDTLLQFPRMSCGVTNPVPDEFQSSVKGSIGSVYSKVDQLEATPGCEDCRKAKRPKMDDEKSSWSSSIISDEEDNWWIKKGLKTVEPSLKVDPPIELTKQVPRGRQKMARKTQSLAQLQATRIEGSQGTSTSHVCDSKVSCPHHGHGVEGENHWVVDVFRTSTPVDIVSVGNSLKQLQFSSVKVGQFNKAAPVEESRITRWKLGADELSAILFLMDLSLDLVLVAKFLLWLLPKGNSSPNFAIQGGRNLVIMPRDVENNTCEVGEAILVSSLRRYENILLSADLVPETMTALMARAASLMSSNGKISGSAALVYARYILKRYGSLPSVVEWHSNFKATCEKRLLSELDHTRPGNVGLMDCIRQTGGAAQEGDPSLVSSAVSAIINSIGISMAKNSDLSEALGERQSRVFEIALATESSTALSGAFAPGKGSRSSQHQLSPESFDSNANITTNDMPNGSGKIPLSRATKVTAAVSALVIGAITHGVITLERIVGLLRLREYLDFVQFVRRTKSSSNGSARSVGASKMENPVEVYVHWFRLLVGNCKTVSEGLVLELVGESSVVAVSRMQRMLPLKLVFPPAYSILAFVLWRPFVSNGNSNSGVHDDSHRLYQSLTMAFHDVIKHLPFRDVCLRDTQGLYELIVADSTDAEFASVLELNGLDMHLKAVAFAPLRARLFLNSLIDCKVPSCGYSHEGGGGVSEAAKNRHQGNGTSLVDKLVSVLDCLQPAKFHWQWIELRLLLNEQALTEKLENHDMPLTDAIRSSCPTSNEKSEASENEKNFIQILLTRLLVRPDAVPLFTEVVHLFGRSVEDSMLKQAEWFLAGQDVLFGRKTIRQKLIIVGESKGLPTKPQFWKPWGWCNNSSSDPITGNKAAAGKKRKLETVTSMEEGEVIEEGLGSKKLLLDEKNRLCFGVTTERAFVKLVLPCIDQSSDESRSTFVNELVKQFSNIEQQVSSVTNRITKHMGTASSGSTEVSSSKGSTRKGLRGGSPSLARRSATTNTTDTVPPPPPSPAALRSSMSLRLHFLLRLLPVICREPSFRNTRHTLASTIVRLLGSRVVYEDSSPRNDLSKSETESTTDPSSMADLSNEVLFDRLLFVLHGLLSNHQPNWLKPRSSSSNESSKDFTLFDRDAAESLQNELSRMQLPDTIRWRIQAAMPTLLPSLRCSLSCQPHSVPPTALTLVQPSGSAAAGLNQRNSPAIPKTTMLSQSQQQQEAENTDVVVDPWTLLEDGTSSGPSSSNPLNNSDMGNVRATCWLKGAVRVRRTDLTYIGSVDEDS
Length2397
PositionKinase
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.254
Instability index47.95
Isoelectric point8.75
Molecular weight266452.81
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01218
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     346.23|      49|      89|     254|     302|       1
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  254-  302 (90.66/59.08)	KDVVDYLQYLLDELLSRNNSYPSQQTRDRSPQMLYTGSIQKISPASASL
  345-  391 (78.47/50.03)	KEVFETLQLLLPIVYSVLESIVLSQTYVQNLVAIAVRFIQEPAPGGS..
  699-  747 (91.70/59.86)	KDVIEYLQYLLDELLSRNSSYPSQQTRDRSPQMLYAGSMQKISPASSSL
  790-  838 (85.40/55.17)	KDVFEILLLLLPIVYVFLESIVLSQTYVQNLVAIAVRFIQEPAPGGSDL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.37|      24|      91|     219|     242|       2
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  219-  242 (51.42/36.93)	WFIKVTYLNQVRPSSGSILSGTPD
  664-  687 (50.95/36.52)	WFIKVTYLNQVRPSTAAISSGTPD
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     469.15|     136|     443|     178|     464|       3
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  178-  435 (233.66/148.27)	IESLSQQHKRLRSLADNIPGYKRKTLFEVLIRNNVPLPRATwfikvtylnqvrpssgsilsgtpdKTQITRCEQWTkdvvdylqylldellsrnnsypsqqtrdrspqmlytgsiqkispasaslYGEETSLHFKWWYMVRLLQWHLAEGLLLPNLIVDWVLRLLQEkevfetlqlllpivysvlesivlsqtyvqnlvaiavrfiqepapggsdlVDNSRRAYTLSALTEMIRYLVLAAPDTFVASDCFPLPPSIAA
  623-  880 (235.49/146.50)	IDSLSQQHKRLRSLADNIPGYRRKTLFEVLIRNNVPLLRATwfikvtylnqvrpstaaissgtpdKTQNSRCEQWTkdvieylqylldellsrnssypsqqtrdrspqmlyagsmqkispassslYGEETSLHFKWWYMVRLLQWHHAEGLLFPYLIVDWVLRLLQEkdvfeilllllpivyvflesivlsqtyvqnlvaiavrfiqepapggsdlVDNSRRAYTLSALTEMIRYLVLAAPDTFVASDCFPLPPSIAA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.08|      28|     454|     437|     464|       4
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  437-  464 (59.04/35.03)	YENLEKLRSNSAEISTQFQGRGVDSRFE
  893-  920 (59.04/35.03)	YENLEKLRSNSAEISTQFQGRGVDSRFE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     202.25|      66|      74|    2117|    2190|       5
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 2117- 2190 (98.55/84.28)	TTNTTDtvpppPPSPAALRSSMSL.RLHFLLRLLpVICREPSFRNTRHTLASTIVR..LLGSRVVYEdsSPRNDLSK
 2193- 2261 (103.69/64.60)	TESTTD.....PSSMADLSNEVLFdRLLFVLHGL.LSNHQPNWLKPRSSSSNESSKdfTLFDRDAAE..SLQNELSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     158.63|      50|      74|    1371|    1421|       6
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 1371- 1421 (80.64/53.24)	MPRDVE..NNTCEVGEAILVSSL..RRYENILLsADLVPETMTALMARAASLMSS
 1444- 1497 (78.00/47.15)	LPSVVEwhSNFKATCEKRLLSELdhTRPGNVGL.MDCIRQTGGAAQEGDPSLVSS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.09|      34|      65|    1947|    1984|       7
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 1947- 1984 (61.56/49.87)	FGRKtirqKLIIVGESK...GLPTKPQFWKPWGWCNNSSSD
 2015- 2051 (52.54/32.88)	LGSK....KLLLDEKNRlcfGVTTERAFVKLVLPCIDQSSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.81|      21|      67|       4|      24|       9
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    4-   24 (39.01/27.14)	YHPANCTSAVNNSATGGGSSG
   74-   94 (38.80/26.94)	FHPPTATSPEENLTKEYAQSG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.45|      24|      74|    1799|    1823|      10
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 1799- 1823 (40.66/29.30)	LIDCKVPSCGYSHEgGGGVSEAAKN
 1875- 1898 (41.79/24.98)	LTDAIRSSCPTSNE.KSEASENEKN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     230.42|      71|      75|    1133|    1206|      11
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 1133- 1206 (114.61/75.03)	VTNPVpdEFQSSV.KG..SIGSVYSKVDQLEATpGCEDCRKAKRPKMDDEKSSWSSSIISDEEDNWWIKKGLKTVEP
 1210- 1283 (115.81/65.42)	VDPPI..ELTKQVpRGrqKMARKTQSLAQLQAT.RIEGSQGTSTSHVCDSKVSCPHHGHGVEGENHWVVDVFRTSTP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01218 with Med12 domain of Kingdom Viridiplantae
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