<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01217

Description BnaCnng24250D protein
SequenceMQSLQQSLAASHQSEPDAPPKQVAQAMERLNQAARVIADIRLGADRILEAMFVASNPRHNDAPLQLFLKEDASMRQHLQDLRSIGKKLEESGVLTESLRSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHIDDGLKTEPGSKKHRASHSLLEHGGEEPVEYKTLPDIQSRLEKLVPNVKVSSYGRLSWLKRASSLPESGSDDDPSEESKPIFQSSSKMRSGLHDEVVDKVAVIELSFPSVFRAVVSLNPAGSVDPDAVAFFSLDEGGSYLHARGFSVHHVYKHITEHAATALQYFLGFGTGTALYSLLLWICSFESLYSKPCSKCGKLLAMDKKSSLILPPLHRAYQELPLAANLSVCEAYHAGCSSDGS
Length396
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.301
Instability index51.70
Isoelectric point7.27
Molecular weight43429.80
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01217
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.11|      19|      43|     167|     186|       1
---------------------------------------------------------------------------
  167-  186 (30.45/24.55)	SKKHRAShSLLEHGG.EEPVE
  213-  232 (31.65/19.66)	SWLKRAS.SLPESGSdDDPSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.59|      16|      42|       4|      19|       2
---------------------------------------------------------------------------
    4-   19 (28.19/15.95)	LQQSLAASHQSEPDAP
   48-   63 (29.40/16.90)	LEAMFVASNPRHNDAP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01217 with Med27 domain of Kingdom Viridiplantae
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