<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01214

Description BnaA05g36840D protein
SequenceMANNPHYPGIQPFQHPNASSIDLPRGFAPSMNFQHRPPIQAPQSEQVAHLASQNFQYVGRGGTTMNNGFPPQSYTPQLLQSMHHSVERPSQSNQGQHVPLGHPSLISQPNVPVASGTFLPEPYLRTSDINMNGGPRALFSYQGATSFEHLRAPTQVTGPSSHSQAQQSAPISQANAPSSIMNPAFEHPKVASSQPIPSQEAATDWVEHTSADGRRYFFNKKTKQSTWEKPVELMTLFERADAKTDWKEHSSPDGRKYYYNKVTKQSTWTMPEEMKIAREQAENASVQGLHAEGVVDASRVLSRSDTASTAAPTGLPNQTSSTPPTSDTSEKLALTSDREQAASVPGSSSPVENVDQVQAIADKTQELCDTAKTDNPSVTVMITSAATLVDKETVSTENSGDADDVSAKNTNQGSGTGPKESQKHVVDSERVDSQSEGKQIHQENISYTNKSEAVDVFKSLLKSANVGSDWTWEQAMREIINDRRYGVLRTLGERKQAFNEFLAQMRKAAEEEKIARQLKRYEDFRRMLEESVELTPSTRWSKAVTMLEDDERFKVVEREKDRRNIFEDHISDLKEKERVKAFEDRKRNIVEYRRFLESCNFIKPNSQWRKVQDRLEVDERCSRLEKIDQLEIFQEYLRDLEREEEERKKIQKEELKKAERKHRDEFRGLIDEHIATGELTAQSSWRDYLVKVKDLPVYLAIASNSSGATPKELFEDAAEDLKRKYHELKSQIKDVLKLRKVTLSTGSTFDEFKVSVSEGISSPSIPDFKLKLVFDDLLERAKEKEEKEARKQTRNTEKLVDMLRSFKYITASSSWEDSKHLVEGTEKFRTIGDESFRKKTFEDYISHLKEQAKRIKQNKKEHVREEHDREKDKYGREKERVRERDNRDHRKQGSADNYNHDVDELHGKERRRSGRDSHSRHRERHTSVKENEADHYKESHKAGRGHKESRQQRGLVREAEDEGREKRRRKEGDSEQTKRAEKEEELEDGECGRY
Length994
PositionUnknown
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-1.118
Instability index49.00
Isoelectric point6.60
Molecular weight113984.78
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01214
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     155.76|      39|      39|     203|     241|       1
---------------------------------------------------------------------------
  203-  241 (77.08/48.10)	TDWVEHTSADGRRYFFNKKTKQSTWEKPVELMTLFERAD
  244-  282 (78.68/49.25)	TDWKEHSSPDGRKYYYNKVTKQSTWTMPEEMKIAREQAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     526.12|      65|      65|     523|     587|       2
---------------------------------------------------------------------------
  427-  459 (19.78/ 6.40)	......................................DS..ER...VDSQS...EG...KQI........HQENISYT.NKS.EAVDVFKS........
  460-  520 (53.33/32.83)	.....LLKSA...NVGSD.......WTWEQA..MREiiND..RRYGVLRTLG...ER...KQA........FNEFLAQMrKAA.EEEKIARQ.....LKR
  523-  587 (102.34/71.44)	DFRRMLEESV...ELTPS.......TRWSKAVTMLE..DD..ERFKVVEREK...DR...RNI........FEDHISDL.KEK.ERVKAFED.....RKR
  591-  649 (80.32/54.09)	EYRRFLESCN...FIKPN.......SQWRKVQDRLE..VD..ERCSRLEK.I...DQ...LEI........FQEYLRDL.ERE.E.....EE.....RKK
  665-  733 (67.04/43.63)	EFRGLIDEHIatgELTAQ.......SSWRDYLVKVK..DL..PVYLAIASNSsgaTP...KEL........FEDAAEDL.KRK...YHELKS.....QIK
  751-  801 (33.01/16.82)	EFKVSVSEGI...S.SPS.......IPDFK.LKLVF..DDllERAKEKEEKE...ARkqtRNT..........EKLVD......................
  802-  861 (67.43/43.94)	....MLRSFK...YITAS.......SSWEDSKHLVE..GT..EKFRTIGDES...FR...KKT........FEDYISHL.KEQaKRIK..QN.....KKE
  862-  924 (48.79/29.25)	HVRE..EHDR...EKDKY.......GR...........EK..ERV....RER...DN...RDHrkqgsadnYNHDVDEL.HGK.ERRRSGRDshsrhRER
  927-  988 (54.07/33.41)	SVKENEADHY...KESHKagrghkeSRQQRGLVREA..ED..E.....GREK...RR...RK..........EGDSEQT.KRA.EKEEELED........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     327.27|      63|      64|      51|     113|       3
---------------------------------------------------------------------------
   11-   50 (55.33/31.05)	..QPF...QHPNASSIDLPRGFAPS......MNFQHRpPIQAP.Q.SEQVAH...............L
   51-  113 (111.63/70.94)	ASQNF...QYVGRGGTTMNNGFPPQSYTPQLLQSMHH.SVERPSQ.SNQGQHVPLGHPSLISQPNVPV
  114-  177 (83.43/50.96)	ASGTFlpePYLRTSDINMNGG.PRALFSYQGATSFEH..LRAPTQvTGPSSHSQAQQSAPISQANAP.
  297-  354 (76.88/46.32)	ASRVL...SRSDTASTAAPTGLPNQTSSTPPTSDTSE.KLALTSD.REQAASVP.GSSSPV..ENV..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      60.95|      16|      34|     364|     379|       4
---------------------------------------------------------------------------
  364-  379 (26.82/17.92)	TQELCD....TAK.TDNPSVT
  380-  395 (19.23/10.74)	VMITSA....ATL.VDKETVS
  396-  416 (14.90/ 6.64)	TENSGDaddvSAKnTNQGSGT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01214 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EHLRAPTQVTGPSSHSQAQQSAPISQANAPSSIMNPAFEHPKVASSQPIPSQEAATDWV
2) HLKEQAKRIKQNKKEHVREEHDREKDKYGREKERVRERDNRDHRKQGSADNYNHDVDELHGKERRRSGRDSHSRHRERHTSVKENEADHYKESHKAGRGHKESRQQRGLVREAEDEGREKRRRKEGDSEQTKRAEKEEELEDGECGRY
3) MANNPHYPGIQPFQHPNASSIDLPRGFAPSMNFQHRPPIQAPQSEQVAHLASQNFQYVGRGGTTMNNGFPPQSYTPQLLQSMHHSVERPSQSNQGQHVPLGHPSLIS
4) WTMPEEMKIAREQAENASVQGLHAEGVVDASRVLSRSDTASTAAPTGLPNQTSSTPPTSDTSEKLALTSDREQAASVPGSSSPVENVDQVQAIADKTQELCDTAKTDNPSVTVMITSAATLVDKETVSTENSGDADDVSAKNTNQGSGTGPKESQKHVVDSERVDSQSEGKQIHQENI
148
847
1
268
206
994
107
445










Molecular Recognition Features






MoRF SequenceStartStop




1) EADHYK
2) GRKYYYNKV
3) LVREAED
932
254
955
937
262
961