<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01208

Description BnaA02g16130D protein
SequenceMSARRIDNGLITAIAIDKDKNSQHALKWAIENILVDSPHCVLLHVQPKGIACSLPLIILKQQYEEQQLFLPFRGFCARKGIIAKEVVLRDSDISNAIVNYITNYSISNIVVGSSAHKSFFKKFKSPDVPSTLLKTAPETCAVFVVSKAKLKKSKSASQAQKHRHRQQDLSSLMYNYDSTSSCDSERQSSLSAQYNNSNSYSSQSYSPRISPPQSLSEFSQSDTENSSYGVVSTMTSYTISQSSTTKGSSISSTSMNQHLEAEEALEMLRALSEEKQERHSDIQAAEMAKQLVKMESQKRRLLELQAKLGKQKMTNNVSYRRYSTKDVEEATNGFSDALKIGEGGYGPVYKAVLDYTFVAIKLMKSGITQGLKQFQQEVEVLSSMRHPNMVILLGACPDYGCLVYEYMENGTLEDRLFCKDNTPPLSWRARFRIAAEIGTGLLFLHSAKPEPLVHRDLKPANILLDRHFTSKISDVGLARLVPPCGANSVSDYHITAAAGTFCYIDPEYQQTGMLGVKSDLYSFGVVLLQIITAMPAMGLGHRVETAIENNKLSEVLDPKVSDWPEEETLELAKLALQCCEMRKKDRPDLASVLLPALKRLREFAREDHEPIQDITSQISQCDEPDPLAPVPSSQINKKLTCGVPETQEKRAHLKMRSHSVPKSRPPRAQRRQYKGNRWSLMSCAPSKVQWGGLP
Length694
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.416
Instability index55.26
Isoelectric point8.79
Molecular weight77440.60
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01208
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.71|      17|      20|     165|     184|       1
---------------------------------------------------------------------------
  165-  181 (31.22/22.04)	RQQDLSSLMYNYDSTSS
  186-  202 (30.49/12.48)	RQSSLSAQYNNSNSYSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.22|      20|      20|     271|     290|       2
---------------------------------------------------------------------------
  250-  270 (25.66/13.80)	ISS.TSMNQH.LEAEEAlEMLRA
  271-  290 (32.53/19.27)	LSE.EKQERH.SDIQAA.EMAKQ
  291-  311 (20.03/ 9.32)	LVKmESQKRRlLELQ.A.KLGKQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.46|      18|      20|     204|     223|       3
---------------------------------------------------------------------------
  204-  223 (24.43/23.99)	SYSpRISPPQSLSeFSQSDT
  227-  244 (32.03/19.47)	SYG.VVSTMTSYT.ISQSST
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01208 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IQDITSQISQCDEPDPLAPVPSSQINKKLTCGVPETQEKRAHLKMRSHSVPKSRPPRAQRRQYKGN
611
676










Molecular Recognition Features






MoRF SequenceStartStop




1) KRAHLKMRSHSVPKSRPPRAQRRQYKGNRWSLMS
649
682