<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01207

Description BnaA03g47570D protein
SequenceMRPPLTGGRGGGGFSGGRGGGGFSGGRGGSSGGRGRGFGDRGRGRGMRGRGRGEPGRGRGAPGRGGMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKTEYRVWNPFRSKLAAAILGGVDNIYIIPGAKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPTKYRMLVGMVDVIFADVAQPDQARIVALNANFFLKTGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQEQFKPAEQVTLEPFERDHACVVGTYRAPKKVKAATAA
Length313
PositionUnknown
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.336
Instability index27.51
Isoelectric point10.09
Molecular weight33110.40
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
box C/D RNP complex	GO:0031428	IBA:GO_Central
Cajal body	GO:0015030	IBA:GO_Central
small-subunit processome	GO:0032040	IBA:GO_Central

GO - Biological Function
histone-glutamine methyltransferase activity	GO:1990259	IBA:GO_Central
RNA binding	GO:0003723	IBA:GO_Central
rRNA methyltransferase activity	GO:0008649	IBA:GO_Central

GO - Biological Process
box C/D RNA 3'-end processing	GO:0000494	IBA:GO_Central
histone glutamine methylation	GO:1990258	IBA:GO_Central
rRNA methylation	GO:0031167	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01207
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.18|      15|      15|       7|      21|       1
---------------------------------------------------------------------------
   33-   49 (24.33/ 6.16)	GRGRG...fGDRGrGRGMRG
   51-   69 (25.85/ 6.98)	GRGEPgrgrGAPG.RGGMKG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.77|      10|      17|       5|      16|       2
---------------------------------------------------------------------------
    5-   16 (16.40/ 9.62)	LTGGRGGGgfSG
   23-   32 (21.37/ 6.82)	FSGGRGGS..SG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.24|      15|      19|     155|     169|       3
---------------------------------------------------------------------------
  155-  169 (25.32/18.53)	GAASGTTVSHVS..DIV
  173-  189 (22.92/16.12)	GCVYAVEFSHRSgrDLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     184.66|      57|     161|      79|     138|       4
---------------------------------------------------------------------------
   79-  138 (87.06/65.50)	RHAGVFIAKGKEDALvtKNLVPGEAVYNEKRISVQNEDGTKTEYRVWNPFRSKlAAAILG
  243-  299 (97.60/63.09)	KTGGHFVISIKANCI..DSTVPAEAVFQSEVKKLQQEQFKPAEQVTLEPFERD.HACVVG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.87|      13|      23|     201|     213|       5
---------------------------------------------------------------------------
  201-  213 (23.78/16.46)	IIEDARHPTKYRM
  221-  233 (22.09/14.85)	IFADVAQPDQARI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01207 with Med36 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MRPPLTGGRGGGGFSGGRGGGGFSGGRGGSSGGRGRGFGDRGRGRGMRGRGRGEPGRGRGAPGRGGMKGGSKV
1
73










Molecular Recognition Features






MoRF SequenceStartStop




1) MRPPLTGGRGGGGFSGGRGGGGFSGGRGGSSGGRGRGFGDRGRGR
1
45