<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01204

Description BnaCnng18150D protein
SequenceMKQMIGSECLVDETTGLTAATTGNSGQTVAVGAANSLPPSSAVVRLDQMSGPVYTVPVPDMILDYMDFNDPMLALSSSIGQIGDFGLDLVWRFIHIVVTLCLIVSGIFELVESYAISLGLIQKYSSIDIEKLKCLAVVVDIEAARDVSKVIELLRWLTTIGVKQVGVFDSQGLLKKSKDMILEMVPRSVLLQETGENNISPDSIALEFISSFDNKEAVVKAANILLQKYLKSIHPENGEGENVFTESHLNEALRVVGECVHVPDLLLVYGPVRSHLGFPAWRLRYTEIVHMGSLKYMRYGSLLKAIHKFTGVRQNYGKVITLFIAGDKMAKSSPVKIPATSLEDYAHSPFHYAVVLGDHAGLTRLVSSLPKLTEPERIHTESDSASQERLAEQISAAIDRRDVPLRETPLHLAVRIGDVFAAETISSAGADITLQNAAGWSPLHEALCRRNAEITETVLRHQRRSAWCKWRRRLPHLIAVLRRMRDFYMEISFHFESSVIPFVGKIAPSDTYRIWKRGGDLRADTSLAGFDRFKIRRASQSFLFLGDGDEFLDVTSGTLLVLNREEKTILNAFENANDPISDGEIAGFCSRTSLYRPGMDVTKAELVEMTNWRRQAKTETIGEWRAKGYEVANVSFSFKSRKVRRQHGCSNVEEKEFQPSSSSRRSRKSVSLPAEGVPVAGSVPRIKEKEFVKSLSPSVWLTEDFPLKTEELLPLLDILANKVKAVRRMRELLTAKFPPGTFPVKLSIPVIPTVKVVVTFSKFVPLRPIDQFYTPLSSPRHLSAVVEDQCDVESEETSDIRTSTSSRSSFSTSSWRRLNITGTGKNAQRRLEEEQAQMVDPFSIATGYKWTSNSDNSVSPFSHFHLSCSFNIVSFLFAKKSSTNSRHIRYFDRNRMASEAPSWADQWGNGGIGVMAAKDETTDGKKDASGKKSGKTKAGFNRAKMVAFIGVNWMKNLVHRKKKDATSS
Length968
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.08
Grand average of hydropathy-0.206
Instability index54.19
Isoelectric point9.04
Molecular weight107771.13
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
cytoplasm	GO:0005737	IBA:GO_Central
integral component of membrane	GO:0016021	IEA:UniProtKB-KW

GO - Biological Function
transferase activity, transferring alkyl or aryl (other than methyl) groups	GO:0016765	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01204
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.72|      15|     141|     423|     497|       1
---------------------------------------------------------------------------
  415-  429 (24.72/41.76)	RIGDVFAAETISSAG
  490-  504 (25.00/28.87)	EISFHFESSVIPFVG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.56|      24|      30|     247|     273|       3
---------------------------------------------------------------------------
  247-  270 (44.31/31.65)	SHLN.EALRV.VGECVHVPDL.LLVYG
  274-  300 (35.25/16.23)	SHLGfPAWRLrYTEIVHMGSLkYMRYG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.88|      12|      30|     402|     413|       4
---------------------------------------------------------------------------
  402-  413 (22.38/14.20)	DVPLRE....TPLHLA
  431-  446 (16.50/ 8.57)	DITLQNaagwSPLHEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.32|      27|     140|     640|     666|       5
---------------------------------------------------------------------------
  640-  666 (47.26/27.75)	SRKVRRQHGCSNVEEKEFQPSSSSRRS
  783-  809 (44.06/25.42)	SAVVEDQCDVESEETSDIRTSTSSRSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.19|      29|     140|     217|     246|       6
---------------------------------------------------------------------------
  217-  246 (43.45/30.74)	AVVKAANILLQKYLKSIhPENGEGENVFTE
  353-  381 (48.74/29.55)	AVVLGDHAGLTRLVSSL.PKLTEPERIHTE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.73|      28|     332|     512|     544|       8
---------------------------------------------------------------------------
  512-  544 (41.58/39.73)	YRiWKRggdlRADTSLAGFDRFKIRRASQ..SFLF
  848-  877 (50.15/31.22)	YK.WTS....NSDNSVSPFSHFHLSCSFNivSFLF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.86|      37|     618|      50|      87|      10
---------------------------------------------------------------------------
   50-   87 (63.32/35.80)	SGPVYTVPVPDMIlDYMDFNDPMLALSSSIGQIGDFGL
  671-  707 (64.53/32.95)	SLPAEGVPVAGSV.PRIKEKEFVKSLSPSVWLTEDFPL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01204 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




1) RHIRYFD
2) TKAGFNRAKMVAFIGVNWMKNLVHRKKK
886
936
892
963