<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01204

Description BnaCnng18150D protein
SequenceMKQMIGSECLVDETTGLTAATTGNSGQTVAVGAANSLPPSSAVVRLDQMSGPVYTVPVPDMILDYMDFNDPMLALSSSIGQIGDFGLDLVWRFIHIVVTLCLIVSGIFELVESYAISLGLIQKYSSIDIEKLKCLAVVVDIEAARDVSKVIELLRWLTTIGVKQVGVFDSQGLLKKSKDMILEMVPRSVLLQETGENNISPDSIALEFISSFDNKEAVVKAANILLQKYLKSIHPENGEGENVFTESHLNEALRVVGECVHVPDLLLVYGPVRSHLGFPAWRLRYTEIVHMGSLKYMRYGSLLKAIHKFTGVRQNYGKVITLFIAGDKMAKSSPVKIPATSLEDYAHSPFHYAVVLGDHAGLTRLVSSLPKLTEPERIHTESDSASQERLAEQISAAIDRRDVPLRETPLHLAVRIGDVFAAETISSAGADITLQNAAGWSPLHEALCRRNAEITETVLRHQRRSAWCKWRRRLPHLIAVLRRMRDFYMEISFHFESSVIPFVGKIAPSDTYRIWKRGGDLRADTSLAGFDRFKIRRASQSFLFLGDGDEFLDVTSGTLLVLNREEKTILNAFENANDPISDGEIAGFCSRTSLYRPGMDVTKAELVEMTNWRRQAKTETIGEWRAKGYEVANVSFSFKSRKVRRQHGCSNVEEKEFQPSSSSRRSRKSVSLPAEGVPVAGSVPRIKEKEFVKSLSPSVWLTEDFPLKTEELLPLLDILANKVKAVRRMRELLTAKFPPGTFPVKLSIPVIPTVKVVVTFSKFVPLRPIDQFYTPLSSPRHLSAVVEDQCDVESEETSDIRTSTSSRSSFSTSSWRRLNITGTGKNAQRRLEEEQAQMVDPFSIATGYKWTSNSDNSVSPFSHFHLSCSFNIVSFLFAKKSSTNSRHIRYFDRNRMASEAPSWADQWGNGGIGVMAAKDETTDGKKDASGKKSGKTKAGFNRAKMVAFIGVNWMKNLVHRKKKDATSS
Length968
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.08
Grand average of hydropathy-0.206
Instability index54.19
Isoelectric point9.04
Molecular weight107771.13
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
cytoplasm	GO:0005737	IBA:GO_Central
integral component of membrane	GO:0016021	IEA:UniProtKB-KW

GO - Biological Function
transferase activity, transferring alkyl or aryl (other than methyl) groups	GO:0016765	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01204
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.72|      15|     141|     423|     497|       1
---------------------------------------------------------------------------
  415-  429 (24.72/41.76)	RIGDVFAAETISSAG
  490-  504 (25.00/28.87)	EISFHFESSVIPFVG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.56|      24|      30|     247|     273|       3
---------------------------------------------------------------------------
  247-  270 (44.31/31.65)	SHLN.EALRV.VGECVHVPDL.LLVYG
  274-  300 (35.25/16.23)	SHLGfPAWRLrYTEIVHMGSLkYMRYG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.88|      12|      30|     402|     413|       4
---------------------------------------------------------------------------
  402-  413 (22.38/14.20)	DVPLRE....TPLHLA
  431-  446 (16.50/ 8.57)	DITLQNaagwSPLHEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.32|      27|     140|     640|     666|       5
---------------------------------------------------------------------------
  640-  666 (47.26/27.75)	SRKVRRQHGCSNVEEKEFQPSSSSRRS
  783-  809 (44.06/25.42)	SAVVEDQCDVESEETSDIRTSTSSRSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.19|      29|     140|     217|     246|       6
---------------------------------------------------------------------------
  217-  246 (43.45/30.74)	AVVKAANILLQKYLKSIhPENGEGENVFTE
  353-  381 (48.74/29.55)	AVVLGDHAGLTRLVSSL.PKLTEPERIHTE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.73|      28|     332|     512|     544|       8
---------------------------------------------------------------------------
  512-  544 (41.58/39.73)	YRiWKRggdlRADTSLAGFDRFKIRRASQ..SFLF
  848-  877 (50.15/31.22)	YK.WTS....NSDNSVSPFSHFHLSCSFNivSFLF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.86|      37|     618|      50|      87|      10
---------------------------------------------------------------------------
   50-   87 (63.32/35.80)	SGPVYTVPVPDMIlDYMDFNDPMLALSSSIGQIGDFGL
  671-  707 (64.53/32.95)	SLPAEGVPVAGSV.PRIKEKEFVKSLSPSVWLTEDFPL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01204 with Med32 domain of Kingdom Viridiplantae
Unable to open file!