<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01203

Description BnaC05g13660D protein
SequenceMAARRVKGKDSNAVTAIAIDKDKNSQHALKWAVENIVVNSPNCILLHVQTKLRIGAEENTEADNEEEAHQFFLPFRGFCARKGIMAKEVLLHDIDIASAIVDYINNNSIANIVLGATARNSFLKKFKTVDVPGTLLKTTPDTCAVFVVSKGKLLTSKSASRPQTPQHSPQPPKPHPHSAISDPGPASSITFSDSGRSSPALNGGFSPPTAHFTPSIIRSSPSRFSNELSPSGHSGESNASFYSILGRSTYGGSSHSSTSMSELADGEERFSGSSYITEQNHNLEAEVRRLRLELQQYNVSMGRESAPHLQGPSAAAESVKLEEAKVARDMLRAMSEMDKHKTQSQIQATEMARRLAEMEKQKRRLVEMQARFKEQDMASNVSYRRYSIRDVEGATDGFSDAQKIGEGGYGPVYKAVLENTSVAIKILKSDVSQGLKQFQQEVEVLSCMRHPNMVILLGACPEYGCLVYEYMENGTLEDRLFCKDNTPPLSWRERFRIAAEIATGLLFLHQAKPEPLVHRDLKPANILLDRHLNSKISDVGLARLVPPAVADSFTNYHMTAAAGTFCYIDPEYQQTGMLGVKSDLYSFGVVLLQILTAMPAMGLSHRVEKALERKRLIEVLDPKVSDWPEEETQVLAQLALQCCELRKRDRPDLATVLLPALSKLREIATEDHDDDRIFSVPRAHNSVHDVDDSDRIFSVPRAHNSVPRSPISSSSQVGFLEPVITLIHESLF
Length732
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.363
Instability index49.97
Isoelectric point6.49
Molecular weight80926.85
Publications
PubMed=25146293

Function

Annotated function
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
GO - Biological Process

Interaction

Binary Interactions

Repeat regions

Repeats

>MDP01203
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.40|      17|      18|     671|     687|       1
---------------------------------------------------------------------------
  671-  687 (37.91/23.73)	DHDD.DRIFSVPRAHNSV
  689-  706 (32.50/19.37)	DVDDsDRIFSVPRAHNSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.47|      15|      20|     327|     343|       3
---------------------------------------------------------------------------
  327-  341 (27.63/20.57)	ARDMLRAMSEMDKHK
  348-  362 (25.85/11.70)	ATEMARRLAEMEKQK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      83.43|      21|      21|     191|     211|       5
---------------------------------------------------------------------------
  174-  194 (19.75/ 6.16)	....PHPHSAISDPgpasSITFSDS
  195-  215 (39.22/18.79)	GRSSPALNGGFSPP....TAHFTPS
  217-  233 (24.46/ 9.21)	IRSSPSRFSNELSP....SGH....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.14|      17|      21|     626|     646|       6
---------------------------------------------------------------------------
  626-  646 (24.58/27.76)	DWPEEETQVLAQLAlqccELR
  649-  665 (28.57/17.86)	DRPDLATVLLPALS....KLR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.49|      14|      24|     480|     493|       7
---------------------------------------------------------------------------
  480-  493 (29.07/16.83)	LFCKDNTP.PLSWRE
  506-  520 (22.42/11.48)	LFLHQAKPePLVHRD
---------------------------------------------------------------------------




Explaination for Stockholm format The "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space.

#=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00)

#=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column. It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column. This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.

#=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.

Alignment of MDP01203 with Med32 domain of Kingdom Viridiplantae

Intrinsically Disordered Regions

IDR SequenceStartStop
1) GGSSHSSTSMSELADGEERFSGSSYITEQNHN
2) SKSASRPQTPQHSPQPPKPHPHSAISDPGPASSITFSDSGRSSPALNGGFSPPTAHFTPSIIRSSPSRFSNELSPSGH
251
156
282
233

Molecular Recognition Features

MoRF SequenceStartStop
NANANA