<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01202

Description BnaA10g28290D protein
SequenceMYIEVNRYIVQVLKKIYSAFTVRAVDYKEISVNGKSNMTPAGDKANVEEPMMYATKQEAKAAFKSLLESVNVQSDWTWEQTTKEIVHDKRYGALRTLGERKQAFNEYLGQRKKVEAEERRWRQKKAREEFVKMLEECEELSSSMKWSKALSLFENDERFKAVDRPRDREDLFDNYIVELERKEREKAVVEHRQKMAEYRKFLETCDYIKASTQWRKIQDRLEDDERCSCLEKIDRLIGFEDYINDLEKEEEELKRVEKEHVRRAERKNRDAFRTLLEEHVAAGILTAKTYWLEYCIEVRDLPQYQAVASNLSGSTPKDLFEDITEELDKQYHEDKSRVKDAMKSRKVSMVSSWMFEDFKSALSEDLSSQPISDINLKLIYNDLVERMKEKEEKEARKFQRLAEEFTNLLRTFKEINAASNWEDVKQLVEESQEYRSIGDDNVSRGLFEEYITSLQEKAKEKERKRDEEKSRKEKDKEEKEKRKDKEKERREKEREREKERSSKREESDGDVDVSEGQKEEKRKGKDRDRKHRRRHHNSDDDVSSDRDDREESKKSSSRKHGNDRKKSRKHANTPESDSESRHKRQKKEQRESSRRGGNDELEDGEVGEDGVVSMISGYTLCKSSGCESENEPDAASILEQEGTMIQR
Length647
PositionUnknown
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-1.341
Instability index51.02
Isoelectric point5.84
Molecular weight76794.52
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01202
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     509.74|      65|      65|     118|     182|       1
---------------------------------------------------------------------------
   56-  112 (66.15/32.28)	.....KQEAKAAFKSLLES...V.NVQSDWTWEQTTK.....EIVHDKRYG.AL......RTLGERKQAFNEYLGQ..RK
  118-  182 (107.01/56.97)	ERRWRQKKAREEFVKMLEE...CEELSSSMKWSKALS.....LFENDERFK.AV......DRPRDREDLFDNYIVELERK
  188-  249 (91.45/47.57)	VVEHRQKMA..EYRKFLET...CDYIKASTQWRKIQD.....RLEDDERCS.CL......EKI.DRLIGFEDYINDLEKE
  260-  330 (74.05/37.06)	HVRRAERKNRDAFRTLLEEhvaAGILTAKTYWLEYCI.....EVRDLPQYQ.AVasnlsgSTPK...DLFEDITEELDKQ
  334-  377 (41.54/17.41)	D......KSR...VK............DAMK.SRKVSmvsswMFED...FKsAL......S.....EDLSSQPISDINLK
  394-  457 (82.00/41.86)	EARKFQRLA.EEFTNLLRT...FKEINAASNWEDVKQ.....LVEESQEYR.SI......GDDNVSRGLFEEYITSLQEK
  462-  506 (47.54/21.03)	ERKRDEEKSRKE..KDKEE...KEKRKDKEKERRE.........KEREREK.........ERSSKREE............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     131.52|      31|      33|     507|     537|       2
---------------------------------------------------------------------------
  507-  537 (56.74/23.91)	SDGDVDVSEGQKEEKRKGKDR....DRKHRRRHHN
  538-  572 (45.02/17.54)	SDDDVSSDRDDREESKKSSSRkhgnDRKKSRKHAN
  576-  598 (29.75/ 9.24)	.......SDSESRHKRQKKEQ.....RESSRRGGN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01202 with Med35 domain of Kingdom Viridiplantae
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