<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01200

Description BnaA04g14330D protein
SequenceMWLAKNNSVGIKEGGSTGVVAVAIDKEKSSQHALKWAVDHLLQRGQSVILVHVKLRPSPLNNNSSLHASSSKLTQEPSLVCRDPEGASKDIFLPFRCFCTRKDIQCQDVLIEEYDVAKALVEYANQAAIEVLVVGSSNKGGFLRFNKPTDIPVAITKTAPDFCTVYVISKGKISTMRSASRSAPTNAPLRSHLNLCHLLPITCELIDSLLSHNAGPWRIAGPWRIAGLWRIAGPWRTNLTHSDFFVSVGKFDFVGFDQNLILRSPFTRRGYGRSYGDLSVPESDISFVSSGRPSIDRMFPNINDMNDPNRTPPRLSNFSDMDYGSNFESSSNYGRRSVDVNSPTDLSSGSFENERFSSASAMQDDVENEMRRLKLELKQTMEMYSTACKEALTAKQKATELQRWKLEEERKLEEARLAEEAALAIAEKEKARSKAAMEAAEAAQRIAELESKKRVNAEMKALKESEEKTKALTALANNDVRYRKYSIEEIESATEFFAEKYKIGEGGYGPVYKCYLDHTPVAVKVLRADAAQGRSQFQQEVEVLSSIRHPNMVLLLGACPECGCLVYEFMANGSLEDRLFRLGNSPPLSWQMRFRIAAEIGTGLLFLHQAKPEPLVHRDLKPGNILLDRNFVSKISDVGLARLVPPTVADTVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQLITAKPPMGLTHYVERALEKGTLSDLLDPAVTDWPLEDTAEFAKLALQCAELRRKDRPDLAKVILPELNRLRTLADESQLVSQ
Length775
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.322
Instability index45.57
Isoelectric point6.91
Molecular weight86394.63
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01200
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.95|      35|      49|     390|     438|       1
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  344-  382 (50.33/28.72)	TDLSSGSFENER.FSSASAMQDD....VENEmrrlKLELKQTME
  399-  438 (47.62/60.37)	TELQRWKLEEERkLEEARLAEEAalaiAEKE....KARSKAAME
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.96|      27|      49|     552|     580|       2
---------------------------------------------------------------------------
  552-  580 (45.52/31.30)	MVLLLGACPEcgCLVYEFMANGS.LEDRLF
  604-  631 (45.44/24.35)	LLFLHQAKPE..PLVHRDLKPGNiLLDRNF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.37|      27|      40|     222|     250|       3
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  222-  250 (48.16/43.65)	PWRIAGLWRIAGPwrTNLTHSDF.FVSVGK
  265-  292 (45.21/31.40)	PFTRRGYGRSYGD..LSVPESDIsFVSSGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     150.30|      47|     536|     155|     205|       4
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  155-  205 (77.38/66.17)	ITKTAPDFCTVYV...ISKGKISTMRSasrSAPTNAPLRSHLNLCHlLPITC.EL
  694-  744 (72.92/49.84)	ITAKPPMGLTHYVeraLEKGTLSDLLD...PAVTDWPLEDTAEFAK.LALQCaEL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01200 with Med32 domain of Kingdom Viridiplantae
Unable to open file!