<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01194

Description BnaAnng06960D protein
SequenceMEGKKPARSLSEHLSLPPTPSPAVAVAINGKKKSKYVAFWALEKFIPEGFSDFKLIYVRPPVTYIPTPMGNAISISELRADVVSAYRQEVDWNTNETLRPYKKMFERRKVRVEILVLESHDPVAAIAEEIAGTRVTKLVIGMSLRGFFSRKIDMSSMIATAVPRFCTVYVVSKGKLASVRPSDSDASGTIRIERIERDSFTSGSTDSPSPRVPSDYQDFLSFVSEAQSRVSHFLPPAKHSEVGSSAVVQMDTSSSETDQSEVSTGRAMQIVPSSGNEEKKSNTSNESFSASFPMGAEAYHAMSFASKWRDHEDRRSIMSSSSSNNHDITNMDWGAVVPENYSFVSHQASNMSEGLLSVHSVTDNNQVNLNFEIEKLRAELKHVQEMYAMAQTETVDASQKLTELNQRKHEESEKLMELKEKEELAKDTASKEKQRYEETMKEAEKVKELMMKEALRRREAEIKAERDAKEKDKLQASLVSPGIQYQHYSWEEIAVATSDFSEDLKIGMGAYGTVYKCNLHHTTGAVKVLHAGETQLSKQFDQELEILSKIRHPHLVLLLGACPERGCLVYEYMDNGSLDDRLMQVNDTPAIPWFERFRIALEVASALVFLHKSKPRPIIHRDLKPGNILLDHNFVSKLGDVGLSTMVNQDDAASKLTYQRTGIISPKSDVYSLGIVILQLITGKPAIAITHMVEEAIGDDAEFMALLDVKAGPWPISETHRPDLKDQIIPALERLRKVVDKAQNLIGRTPSGPPSHFICPLLKGVMNEPCVAADGYTYDREAIQDWLRENDTSPVTNLPLPNKNLLANYTLYSAIMEWKSNK
Length822
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.423
Instability index40.95
Isoelectric point6.03
Molecular weight91989.47
Publications
PubMed=25146293

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01194
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.55|      15|     118|     579|     593|       1
---------------------------------------------------------------------------
  579-  593 (30.53/19.85)	DD.RLMQVNDTPAIPW
  699-  714 (25.02/15.00)	DDaEFMALLDVKAGPW
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.65|      25|      47|     406|     437|       2
---------------------------------------------------------------------------
  411-  435 (40.71/31.13)	E....SEKLMELKEKEELAKDTAS.......KEKQR
  438-  473 (28.94/ 6.86)	EtmkeAEKVKELMMKEALRRREAEikaerdaKEKDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.37|      20|     118|     221|     240|       3
---------------------------------------------------------------------------
  199-  218 (35.84/25.06)	SFTSGSTDSPSPRVPSDYQD
  221-  240 (34.53/23.83)	SFVSEAQSRVSHFLPPAKHS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     228.62|      76|     118|       1|      81|       4
---------------------------------------------------------------------------
    1-   81 (119.39/81.29)	MEGKKPARSLSEHLSLPPTPSPAVAVAING..KKK...SKYVAFwALEKFIP.EGFSDFKLIYVRPPvtyiPTPMGNAISISELRAD
  117-  198 (109.23/61.68)	LESHDPVAAIAEEIAGTRVTKLVIGMSLRGffSRKidmSSMIAT.AVPRFCTvYVVSKGKLASVRPS....DSDASGTIRIERIERD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.60|      26|     118|     634|     663|       5
---------------------------------------------------------------------------
  634-  663 (38.87/41.47)	FVSKLgdvgLSTMVNQD.DAASKLTYQRTGI
  757-  783 (43.73/33.22)	FICPL....LKGVMNEPcVAADGYTYDREAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.54|      28|      37|     277|     307|       6
---------------------------------------------------------------------------
  277-  307 (44.08/35.54)	EEKK....SNTSNESFSASFPMGA...EAYhamSFASK
  312-  346 (42.45/25.49)	EDRRsimsSSSSNNHDITNMDWGAvvpENY...SFVSH
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01194 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EVGSSAVVQMDTSSSETDQSEVSTGRAMQIVPSSGNEEKKSNTSNESFSASF
2) TVDASQKLTELNQRKHEESEKLMELKEKEELAKDTASKEKQRYEETMKEA
241
394
292
443










Molecular Recognition Features






MoRF SequenceStartStop




NANANA