<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01191

Description BnaA09g28640D protein
SequenceMSSELKQLIVVVEGTAALGPYWQTIVSDYLLKIIRSFCGTELNGERNPVSNVELSLVIFNSHGSYCACLVQRSGWTKDVNIFLRWLSSIQFAGGGFNEAATAEGLAEALMMFSPPSGQAQPSNDLKRHCILITASNPYSLPTPVYRPKLQNPERYENGHAQSESRLSDAETVASYFSRCSVSLSVVCPKQLPKIRALYNAGKPNAQSADLSIDTVKNAFYLVLISENFVEARAALSHSATNFPQTTQSPVKVDRATVAPSLPVTGQPLPPVPSANGPIMNRQPVSVGPVPTATVKVEPGTISSMAAVPTFPHIPSVARPATQAIPSVQTSSASPVSQEMVTKAENAPDIKPVVGGMTPQLRTGPPGGANVNLLNNLSQVRQVMSSAALAGASSSGQSAGNTSMAGSGALAGTEQAGQSPAPNNAFSPQTTSNLGVSQPMQGMNQGSHSGAQMMQSGISMNQNMMSQGNVSSGTGGMMPTPGVGQQTQSGIQQLGGSNSSAPNVQLSQPSSGAMQPSQSKYVKVWEGNLSGQRQGQPVLITRLEGYRSASASDSLAANWPPNMQIVRLISQDHMNNKQYVGKADFLVFRAMSQHGFLGQLQDKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQIQNQQQQQLQQQQQIQQQQQQQQIQQQQQQQIQQQHHHQQQQLPQLQQQQQHQMSQLQHHQQQQLSQLHHHHQQQQQTSPLNQMQQQTSPLNQMQQQQQPQQMVGSGVMGGQAFGQAPGRSQQGAGGGGQPTMPGAGFMG
Length781
PositionUnknown
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.05
Grand average of hydropathy-0.440
Instability index60.19
Isoelectric point9.17
Molecular weight83694.30
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01191
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     113.76|      21|      21|     664|     684|       1
---------------------------------------------------------------------------
  653-  675 (37.11/10.04)	QQQIQQQ..QQqqQIQQQQQQQIQQ
  676-  697 (39.56/11.15)	QHHHQQQ..QL.pQLQQQQQHQMSQ
  699-  721 (37.09/10.04)	QHHQQQQlsQL..HHHHQQQQQTSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     198.12|      38|      38|     441|     478|       2
---------------------------------------------------------------------------
  390-  426 (39.26/11.96)	GASSSGqSAGNTSmaG..SGALAGTE..QAGQSPAPNNAFS
  427-  466 (57.40/21.57)	PQTTSN.LGVSQPmqGMNQGSHSGAQMMQSGISMNQNMMSQ
  467-  494 (30.11/ 7.11)	GNVSSG.TGGMMPtpGVGQQTQSGIQQLG............
  495-  525 (41.67/13.24)	GSNSSA......PnvQLSQPS.SGA..MQPSQSKYVKVW.E
  724-  747 (29.67/ 6.88)	...............QMQQQTSPLNQ.MQQQQQP.QQMVGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     138.68|      37|      38|     257|     293|       3
---------------------------------------------------------------------------
  181-  210 (23.18/ 6.25)	..............VSLSV...VCPKQ.LP.....KIRalyNAGKP....NAQ.....SADL
  257-  284 (44.01/18.75)	..............VAPSL..PVTGQP.LP.....PVP...SANGP....IMN.....RQPV
  285-  330 (36.05/13.98)	SVGPVPTAT...vkVEPGTisSMAAVPtFP.....HIP...SVARPatqaIPS.....VQTS
  331-  383 (35.44/13.61)	SASPVSQEMvtkaeNAPDI.kPVVGGM.TPqlrtgPPG...GANVN....LLNnlsqvRQVM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.80|      19|      50|     583|     601|       4
---------------------------------------------------------------------------
  583-  601 (33.50/17.03)	DFLVFRAMSQHGFLGQLQD
  634-  652 (28.30/13.15)	DMVVFKPQIQNQQQQQLQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.21|      13|      17|     751|     765|       5
---------------------------------------------------------------------------
  751-  765 (20.55/13.47)	GGQAfgQAPGRSQQG
  769-  781 (27.66/11.90)	GGQP..TMPGAGFMG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01191 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSHSATNFPQTTQSPVKVDRATVAPSLPVTGQPLPPVPSANGPIMNRQPVSVGPVPTATVK
2) MSSAALAGASSSGQSAGNTSMAGSGALAGTEQAGQSPAPNNAFSPQTTSNLGVSQPMQGMNQGSHSGAQMMQSGISMNQNMMSQGNVSSGTGGMMPTPGVGQQTQSGIQQLGGSNSSAPNVQLSQPSSGA
3) PSVARPATQAIPSVQTSSASPVSQEMVTKAENAPDIKPVVGGMTPQLRTGPPGGANVNLLNNL
4) QQQQQQIQQQHHHQQQQLPQLQQQQQHQMSQLQHHQQQQLSQLHHHHQQQQQTSPLNQMQQQTSPLNQMQQQQQPQQMVGSGVMGGQAFGQAPGRSQQGAGGGGQPTMPGAGFMG
235
383
314
667
295
512
376
781










Molecular Recognition Features






MoRF SequenceStartStop




NANANA