<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01188
| Description |
BnaC09g14340D protein |
| Sequence | MVVVTSDDRLAGALPHVQPMSAASKMCGNHLPEAEKSRVHLPQTNWSKHANAFECIPSSNNFLSSTMLYSLESQKPRRSRETASRPIYNIIPVDVQTSAHQHISKAWCALTNLSINNTYLRPGITPAIDDINTNCSFSTRGRFTAKVTSNTDGSFYAHNHQEDSQKRIRGTATSFDCSSSSSPGDGQLTSGKVPWVNNEVRDSITGCINGMEVPPIRNLAHPARQVEVIEIDDDDILKGIDVEQIVMEHYYSTCTHQPSVNIFACRGKEQPCLPPELCSICSHGVKLGLCLQASSHVEQMKDALLAVSNELLDDSTDLSPGHFEQLCQERLLLKKQIQLLEILIQDKEKKNSECLASRPGHNIQYETPQTTNHKADYAQADSRAHIKEQGRYVSDNWNMPRDYLCSEDSSRDFPWTKNLELNNKRVFGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTYQLPALICAGITLVISPLVSLIQDQIMNLLQANIHAASLSAGMDWTQQLDILRELSSENSKYRLLYVTPEKVAKSDSLLRHLESLNSHSLLARFVIDEAHCVSQWGHDFRPDYQGLGILKKKFPKIPMLALTATATASVKEDVVQALGLVNTVVFRQSFNRPNLWYSVVPKTNKCLEDIDQFIKKNHFDECGIIYCLSKMDCEKVTETLRKFGHKAAFYHGSMDPGKRAFVQKKWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYYQECGRAGRDGQRSSCVLYYCYSDYIRVKHMISQGGPGQSTMTTGYNRIASSGRTLESNTDNLLRMVSYCENEVDCRRFLQLVHLGEIFDSTNCKNTCDNCSSSKTLIEKDVTLIGRQLVELVKLTGERFSSAHIVELYRGSLNQTVKKHGHETLHLHGAGKHLSKSEASRILHYLVTKDILTEYVKKSDLYGSVSSLLKVNRSKAASILSGGQTIEMRFPSAVKVVKPSKHGPTPARVALKQTTLPMAPAPPQDSILSDTLFKALKKLRADIVKESSDAVMSYHIFGNPTLQQISKRLPRTKEELLDIHGLGKAKVSKYGDRLLETIESTINNHYGTNKKEGTGSGKRRRDENTNPIVVDDDDDPDWTPSQQSYKKAYAVRGQTCEEATC |
| Length | 1126 |
| Position | Unknown |
| Organism | Brassica napus (Rape) |
| Kingdom | Viridiplantae |
| Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae>
rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
|
| Aromaticity | 0.07 |
| Grand average of hydropathy | -0.440 |
| Instability index | 47.08 |
| Isoelectric point | 8.39 |
| Molecular weight | 125760.53 |
| Publications | PubMed=25146293
|
Function
| Annotated function |
|
| GO - Cellular Component | chromosome GO:0005694 IBA:GO_Central
cytoplasm GO:0005737 IBA:GO_Central
nucleus GO:0005634 IBA:GO_Central
|
| GO - Biological Function | 3'-5' DNA helicase activity GO:0043138 IBA:GO_Central
ATP binding GO:0005524 IEA:UniProtKB-KW
four-way junction helicase activity GO:0009378 IBA:GO_Central
nucleic acid binding GO:0003676 IEA:InterPro
|
| GO - Biological Process | DNA duplex unwinding GO:0032508 IBA:GO_Central
DNA recombination GO:0006310 IBA:GO_Central
DNA repair GO:0006281 IBA:GO_Central
DNA unwinding involved in DNA replication GO:0006268 IBA:GO_Central
double-strand break repair via homologous recombination GO:0000724 IBA:GO_Central
|
Interaction
Repeat regions
| Repeats |
>MDP01188
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 76.77| 24| 24| 1023| 1046| 1
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1023- 1046 (41.16/25.72) GNPTLQQISKRLPRTKEELLDIH.G
1048- 1072 (35.61/21.29) GKAKVSKYGDRLLETIESTINNHyG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 44.55| 14| 24| 513| 527| 2
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513- 527 (19.87/18.20) ILRELSSENSkYRLL
540- 553 (24.68/17.00) LLRHLESLNS.HSLL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 85.22| 29| 34| 576| 607| 3
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578- 607 (42.75/34.71) LG.....ILKKKFPKiPMLALTAT.ATASVKEDVVQ
609- 643 (42.47/22.72) LGlvntvVFRQSFNR.PNLWYSVVpKTNKCLEDIDQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 79.42| 23| 149| 727| 755| 5
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723- 747 (36.47/31.04) VIHHSLPKSIEgyYQECGRAGRDGQ
752- 774 (42.95/19.15) VLYYCYSDYIR..VKHMISQGGPGQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 40.36| 13| 150| 856| 870| 6
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816- 828 (22.21/ 7.56) QLVHL.GEIFDSTN
856- 869 (18.15/ 6.39) ELVKLtGERFSSAH
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 264.33| 85| 206| 201| 296| 7
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201- 296 (128.51/100.66) RDSITGCINGMEVPPIRNL.........AHPAR..QVEVIeiddDDILKGIDVEQIVMEHYYSTCTHQ.PSvniFACRGKEQpCLPPeLCSICSHGVkLGLcLQASSH
401- 497 (135.83/75.11) RDYLCSEDSSRDFPWTKNLelnnkrvfgNHSFRpnQREII....NATMSGCDVFVLMPTGGGKSLTYQlPA...LICAGITL.VISP.LVSLIQDQI.MNL.LQANIH
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 60.26| 16| 23| 650| 666| 8
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650- 666 (28.28/19.38) FDECGIIYCLSkMDCEK
674- 689 (31.99/17.66) FGHKAAFYHGS.MDPGK
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|
