<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01186

Description BnaA10g11060D protein
SequenceMMSNVFDGAPPDYSSISVAVKGSIGDTVGGAASRRAVRWAVDNLLPHIDRLVLVHVMPTVTTIPSPSGSKIPVEDLEESVVSMYKQDLRKEFEEVFVPFNKICGSIKVETLLLEHDDPAKALLKYILDSEVECLVIGSCSPSFLIRKKGQEMPLMVLGEAPETCDVYVIAKDRVLTKSTNQLSPVKLSSDSSYRFRTPNRAEAHTDPFNRTCSDKTGLAASYIISSASTGIRLGHDEQVRSILGHNIVSTSNMQLNPGANMNKPKWQSNVMYEIEQLRKQVQTTLCMYKQACEELVHKQTQVQSLSYECIKDTKRVISALEKEEMLRKEAEEEKQKHLKAVKEIEEAKSMLAKEFCDRKLAELNALQQALKKQQVMDQLLLSDSRYRKYTKEEIVAATDNFSLSKIIGEGGYGKVYKCSLDHTPVALKVRIPDTIEKKQEFLREISVLSQLRHPHVVLLLGACPDNGCLVYEYMDNGSLDAHISRKKGKPSLPWFIRFKIIYETACGLAFLHNSKPEPIVHRDLKPGNILLDKNFVSKIGDVGLAKLISEEAPESVTVYRNSTIAGTLYYLDPEYQRTGTFRPKSDLYAFGIIVLQLLTARHPNGLLFCVEDAVKRGCFGDMLDGSVREWPLAEAEELARIAIQCSQLKCRDRPDLDTQVLPALKRILESANSRLKTEQAKARPPSHYYCPILKEIMEDPQIAADGFTYEGKAIKAWIQNNQNVSPVTKNRLRLCDLTPNHTLKSAIQEWRSRSGLDLSTTLGSS
Length765
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.322
Instability index47.39
Isoelectric point8.11
Molecular weight85779.76
Publications
PubMed=25146293

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01186
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     246.53|      81|     147|     392|     478|       1
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  392-  478 (130.97/120.47)	EEIVAATDNFSLSKIIGEGGYGK..VYKCS.LDHTPVALKV...RiPDTIEKKQE.FLREISVLSQL..RHPHVVLLlgaCPDN....GClvYEYMDNGS
  533-  626 (115.56/87.46)	KNFVSKIGDVGLAKLISEEAPESvtVYRNStIAGTLYYLDPeyqR.TGTFRPKSDlYAFGIIVLQLLtaRHPNGLLF...CVEDavkrGC..FGDMLDGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     479.33|     158|     187|      26|     194|       2
---------------------------------------------------------------------------
   26-  194 (243.69/240.55)	DTVGGAASRRAVRWAVDNLLPHID..RLVLVHVMPTVTTIPSPSGSKIPVEDLEESVvsMYK.QDLRKEFEEVFVPFNKICGSI.....KVETLLLEHDDPAK....ALLK.YILDSEVEclviGSCSPSFLIRKKGQEMPLMvLgeAPETCD...VYVIAKDRVLTKstNQLSPVKLSSDSSYR
  214-  387 (235.64/195.28)	DKTGLAASYIISSASTGIRLGHDEqvRSILGHNIVSTSNMQLNPGANMNKPKWQSNV..MYEiEQLRKQVQTTLCMYKQACEELvhkqtQVQSLSYECIKDTKrvisALEKeEMLRKEAE....EEKQKHLKAVKEIEEAKSM.L..AKEFCDrklAELNALQQALKK..QQVMDQLLLSDSRYR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01186 with Med32 domain of Kingdom Viridiplantae
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