<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01185

Description BnaA07g01480D protein
SequenceMVEMLTQKGREMSSGGGGGPKADEGELYVAVAVKGIIGDKLGGAGSRRAVRWAVDNLLPKADRFVMIHVIPPISTIPTPNGERLPLEEVEERLVEMYVRDVKQEFETVFVPFLKMCKSNRTKCQVETLLIEYDDPAKALLRFIYKSGVNSLVMGSFNSNIFTRRAKSPGVPLTVLTYAPETCEVYIVCRDRITTKSMDPLINAAPCTSPKAAATARRFLKDGAASFHTVQTQNSSDPGESIEVGTRRSASAKELRLEALSLAIREPETPQSSKASSATVQDVIRRRGGSDIPQLNYSDFDETSEQKSSIENIVKEQRDSSPPPATSRKSKKVEIEAEVERLKKELQNTVVKYKQACEELFSTQNKVQVMSSECSKDARRVNNAVEKEVLHRKTAALEKERHMKAIKEVEAAKALLAREYCQRQIAEVNALKNYLEKKKVIDQLLGTDQRYRKYTIEEIFIATEGFSPEKVIGEGGYGKVYRCSLDSTPAAVKVVRLDTPEKKQEFLKEVEVLSQLRHPHVVLLLGACPENGCLVYEYLENGSLEEYIFHQKNKPPLPWFIRFRVIFEVACGLAFLHSSKPEPIVHRDLKPGNILLNRNYVSKIADVGLAKLVTDVAPDNVTMYRHSVLAGTLHYIDPEYHRTGTIRLKSDLYAFGIIILQLLTARQPNGLVHAVENAVNKGTLTEMLDKSVTDWPLAETEELARIGLKCAEFRCRDRPDLKEEVIPVLKRLVETANSKIKKERSNLRAPSHYFCPILREIMEEPEIAADGFTYEKKAILAWLEKHNISPVTRQKLDHFKLTPNNTLRSAIHDWKSRVRFSNAVVNITG
Length828
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.382
Instability index47.98
Isoelectric point8.84
Molecular weight93129.01
Publications
PubMed=25146293

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01185
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.30|      25|      37|     211|     247|       1
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  193-  218 (39.53/43.61)	TTKSMDPLINAAPCTSPkAAATARRF
  231-  256 (36.77/15.64)	TQNSSDPGESIEVGTRRsASAKELRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     290.71|     139|     395|      34|     190|       2
---------------------------------------------------------------------------
   34-  121 (87.90/66.53)	.............................................................................................................................................................................................................................................................................................................................KGIIgDKLGGAgSRRAVRWAVDNLlpkadrFVMIHVIPPISTIPTPN.GE..RLPLEEVEE..RLVEMYVRDVKQEFeTVFVPFLKMCKSNRT
  122-  190 (49.49/43.48)	KCQVETLLI.EYDDPAkALLRFIYKSGvNSLVMGSFnsnIFTRRAKSPGVPLTVL.TYAPETcevyIVCRD...................................................................................................................................................................................................................................................................................................................................................
  437-  520 (86.38/43.35)	.......................................................................rittksmdplinaapctspkaaatarrflkdgaasfhtvqtqnssdpgesievgtrrsasakelrlealslairepetpqsskassatvqdvirrrggsdipqlnysdfdetseqkssienivkeqrdsspppatsrkskkveieaeverlkkelqntvvkykqaceelfstqnkvqvmssecskdarrvnnavekevlhrktaalekerhmkaikeveaakallareycqrqiaevnalknylekKKVI.DQLLGT.DQRYRKYTIEEI......FIATEGFSPEKVIGEGGyGKvyRCSLDSTPAavKVVRLDTPEKKQEF.LKEVEVLSQLRHPHV
  526-  587 (66.94/31.51)	ACPENGCLVyEYLENG.SLEEYIFHQK.NKPPLPWF...IRFRVIFEVACGLAFLhSSKPEP....IVHRD...................................................................................................................................................................................................................................................................................................................................................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01185 with Med32 domain of Kingdom Viridiplantae
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