<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01181

Description BnaA06g10420D protein
SequenceMDNNNWRPSGDQQRQQLYQSQRTLQEMPSYSTAQTESGNAVDWQEEVFQKIKTIQEAYLPDLAVIYQRAASRVQQMGSLPRQRRSEQFEKLKQFKAAVERMILFLSVSKRDVIPALRDKVAIYEKQTIDLVNMLRPRNPVQQGELPQQSSHVVFSSQGQQSQNQPSQQQMMPLQSHHQQLQQPNLQQRLQSSGQFTGSLLPPQNVVDQQRQLLYQSQRTLPEIPSSLLNSMAQTESGNAVDWQEEVYQKIKTLRDTYLSDLKEVKQRVAAKLQQQNSFPHQQRSLQFNRLKQLKTMLERMIQFLSVSKRNIKPALKDKVASYERQIKRFVNMHMPRKPVQQGQLPQPQMQPVKQQSSQNGNLAINRGDWRALHPPGSRQKNVNTLLETLKKHVPYSGEEGIEELMRIAVSFEELIFNTAKNQVSLFVIKLNLICATRTTFESLNDMNESILKRRLKEPFDTQYLYKLRGHSCQLKTHEGHLMDNNNWRLSIPNGESAAINNGEWRKQLPPDSRQKIVNKIMEILSRHLPQSGPEGINELMRIAARFEEKIFSGAVNQTDYLRKISMKMLAMETKSQNAAGPSATTPAANNTTSMDSIPANRGQLLPGTLPNNQSQAPQPLMSQTIQSNTAFGMAGSTGLPSSIPPVSSIGNDNVTSVVNQNSNMQNVAGVLQDSSGQHGLSSNMLSGSHRQMLRRPHTMSSQQQQLLRQNFRSGNFSNPNSLLPSQIQPGSTTSATQPSAVSSAPLQGLHTNQQSSPQVSAQSSLLRQHPQSQQASVIHQQQTSLPQQSISPQRQQASNSSVIQQRQMMGQHVVGAMQQQHQQRLLNQQNNTMNMQQQQNQHPPAQQQFISQQNSLHQQQPLGIQSNVAGLQQPQQQLLSSQTNQQSVHMLSQPTAALQRTHQAGHGLFPSQGQQSQNQPSQQQMMPLQSHHQQLQQPNLLQQDVQQRLQSSGQVTGSLLPPQNVVDQQRQLYQSQRTLPEMPSSSVDSTAQTENANGVDWQEEVYQKIKIMKDAYLPDVTEIYQRVIAKLQQMDSLSQQQRSEQFNKLKQFKIMVERMIQFLSVSKRNIVPALRDRVAYYEKQIVDFLNMHRPRKLVQQGKLPQPQMQPVKQQSSQNGNLAINTVDWRTLHPPASRQKNANTLLETLKKHVPYSGEEGIEELKRIAVSFEELIFNTAKNQMDYFCKISLKMQSMEEGS
Length1199
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.05
Grand average of hydropathy-0.805
Instability index66.48
Isoelectric point9.86
Molecular weight136197.23
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01181
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|    1066.63|     168|     198|      21|     188|       1
---------------------------------------------------------------------------
    4-  104 (178.49/61.65)	...........................NNWRPSGD...QQRQQLYQS.......................................................................Q......RTLQEMPS...YSTAQTESGNAVDWQEEVFQKIKTIQEAYLPDLAVIYQRAASRVQQMGSLPRQR.RSEQFEKLKQFKAAVERMILF
  105-  188 (131.29/43.29)	LSVSKRDVIPALRDKVAIYEKQTIDLVNMLRPRNP.V.QQGELPQQSSHV........VFSSQGQQ....SQNQPS..QQQMM......PL.QSHHQQ..LQQP....NL.....QQR..............................................................................................
  199-  303 (170.56/58.56)	............................LLPPQNV.VdQQRQLLYQS.......................................................................Q......RTLPEIPSsllNSMAQTESGNAVDWQEEVYQKIKTLRDTYLSDLKEVKQRVAAKLQQQNSFPHQQ.RSLQFNRLKQLKTMLERMIQF
  304-  396 (114.29/36.68)	LSVSKRNIKPALKDKVASYERQIKRFVNMHMPRKP.V.QQGQLPQ................PQMQP....VKQQSS..QNGNL......AInRGDWRA..LHPP....GS.....RQK.nvntllETLKKHVP...YS..........................................................................
  685-  771 (52.52/12.66)	LSGSHRQM...LR.................RPHTMsS.QQQQLLRQNFRSgnfsnpnsLLPSQIQPgsttSATQPS..AVSSA......PL.QGLHT....NQQ....SS.....PQVSaqssllRQHPQ..................................................................................
  781-  890 (115.01/36.96)	......................................QQTSLPQQS............ISPQRQQ....ASNSSViqQRQMMgqhvvgAM.QQQHQQrlLNQQnntmNM.....QQQQ......NQHPP.........AQ.........QQFISQQNSLHQQQ..P.LG.I.QSNVAGLQQ....PQQQlLSSQTN..QQSVHM.......
  891-  948 (58.70/15.06)	LS............................QPTAA.L.QRTH...QAGHG........LFPSQGQQ....SQNQPS..QQQMM......PL.QSHHQQ..LQQP....NLlqqdvQQR..............................................................................................
  959- 1062 (174.96/60.27)	............................LLPPQNV.VdQQRQL.YQS.......................................................................Q......RTLPEMPSssvDSTAQTENANGVDWQEEVYQKIKIMKDAYLPDVTEIYQRVIAKLQQMDSLSQQQ.RSEQFNKLKQFKIMVERMIQF
 1063- 1121 (70.81/19.77)	LSVSKRNIVPALRDRVAYYEKQIVDFLNMHRPRKL.V.QQGKLPQ.........................PQMQPV..KQQ................S..SQNG....NL......................................................................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     179.28|      42|     757|     381|     432|       2
---------------------------------------------------------------------------
  381-  432 (72.27/54.15)	NVNTLLetlkkhvpysGEEGIEELMRIAVSFEELIFNTAKNQVSLFV.IKLNL
  532-  557 (36.42/23.41)	................GPEGINELMRIAARFEEKIFSGAVNQ...........
 1140- 1192 (70.59/52.72)	NANTLLetlkkhvpysGEEGIEELKRIAVSFEELIFNTAKNQMDYFCkISLKM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.98|      14|     132|     468|     485|       3
---------------------------------------------------------------------------
  434-  447 (24.67/10.80)	CATRTTFESLNDMN
  472-  485 (26.31/25.67)	CQLKTHEGHLMDNN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.12|      26|      87|     492|     530|       4
---------------------------------------------------------------------------
  498-  529 (45.26/48.79)	AINNGEWRKQLPPDSRQKivnkimEILSRHLP
 1122- 1153 (44.87/17.86)	AINTVDWRTLHPPASRQKnantllETLKKHVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.17|      24|      31|     605|     635|       5
---------------------------------------------------------------------------
  605-  628 (42.03/14.71)	LPGTLPNNQSQAPQPLMSQTIQSN
  639-  662 (37.14/20.80)	LPSSIPPVSSIGNDNVTSVVNQNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.01|      10|     757|     189|     198|       6
---------------------------------------------------------------------------
  189-  198 (20.84/12.16)	LQSSGQFTGS
  949-  958 (20.17/11.51)	LQSSGQVTGS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01181 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDNNNWRPSGDQQRQQLYQSQRTLQEMPSYSTAQTE
2) METKSQNAAGPSATTPAANNTTSMDSIPANRGQLLPGTLPNNQSQAPQPLMSQTIQSNTAFGMAGSTGLPSSIPPVSSIGNDNVTSVVNQNSNMQNVAGVLQDSSGQHGLSSNMLSGSHRQMLRRPHTMSSQQQQLLRQNFRSGNFSNPNSLLPSQIQPGSTTSATQPSAVSSAPLQGLHTNQQSSPQVSAQSSLLRQHPQSQQASVIHQQQTSLPQQSISPQRQQASNSSVIQQRQMMGQHVVGAMQQQHQQRLLNQQNNTMNMQQQQNQHPPAQQQFISQQNSLHQQQPLGIQSNVAGLQQPQQQLLSSQTNQQSVHMLSQPTAALQRTHQAGHGLFPSQGQQSQNQPSQQQMMPLQSHHQQLQQPNLLQQDVQQR
3) MLRPRNPVQQGELPQQSSHVVFSSQGQQSQNQPSQQQMMPLQSHHQQLQQPNLQQR
4) NMHMPRKPVQQGQLPQPQMQPVKQQSSQNG
5) QRQLYQSQRTLPEMPSSSVDSTAQTENANG
1
571
133
331
969
36
948
188
360
998










Molecular Recognition Features






MoRF SequenceStartStop




NANANA