<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01180

Description BnaA06g10440D protein
SequenceMGTCVDKGETAMDTHDWRAQLPSGGRQKVVNKIMEALHKYLRVSGPEEMNELRKIASRFEEKIFSDAVNLTDYLRKISIKMLPLDTKAPNAAGSSLPIPGGYNRLPLNPGCHQMTVEGPVEAEPVVNTGDWRTCLPPDSRKKNANKIKGTLKEHVPNCGKEGDIELKKIAASFEELIFNTAIDQFLVLVLVSARRNSESPKALAANLSFFLFLVNYSYMINLPYSGPEGINELKRIAVRFEEKVFSSSVHQNDYLRKISMKMLTMETKSQNVAGSASSIPADSSNLAFDELTANCYHPSLLSRRSPPQSHDHNGNVEPFLLNEEPAINSVDWRTQLPPGSRQNIVNKIMDTLKKHFPYSGPEGINELKRIAARFEEKIFSSAVHQTDYLRKISMKILTMETKAQNAAGSDSSILADSNNLTLDDIMNHLIKDNAEPSLLNVEPAINSGDWRIQLPPDSRQKNIDKLLETLKKHVPYSGQEGIEELRRIAISFEELIFNTALNQVDYFRKISLKMQTMEKDD
Length521
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.470
Instability index46.52
Isoelectric point6.67
Molecular weight58497.06
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01180
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     600.55|      88|     133|     222|     318|       1
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    9-  106 (132.10/80.98)	....ETAMDTHDWRAQLP.sggrqkvvnkimealhkyLRVSGPEEMNELRKIASRFEEKIFSDAVNLTDYLRKISIKMLPLDTKAPNAAGSSLPIPGGYNRL...P
  123-  192 (61.12/32.27)	....EPVVNTGDWRTCLPP.dsrkknankikgtlkehVPNCGKEGDIELKKIAASFEELIFNTAIDQFLVLVLVS...............................
  193-  290 (140.55/86.78)	..ARRNSESPKALAANLSF......flflvnysyminLPYSGPEGINELKRIAVRFEEKVFSSSVHQNDYLRKISMKMLTMETKSQNVAGSASSIPADSSNLAFDE
  320-  424 (166.11/101.57)	LLNEEPAINSVDWRTQLPP.gsrqnivnkimdtlkkhFPYSGPEGINELKRIAARFEEKIFSSAVHQTDYLRKISMKILTMETKAQNAAGSDSSILADSNNLTLDD
  438-  518 (100.67/71.78)	LLNVEPAINSGDWRIQLPP.dsrqknidklletlkkhVPYSGQEGIEELRRIAISFEELIFNTALNQVDYFRKISLKMQTME........................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     110.25|      16|     116|     340|     355|       2
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   26-   40 (22.57/12.44)	.RQKVVNKIMEALHKY
  139-  154 (28.31/17.29)	SRKKNANKIKGTLKEH
  340-  355 (30.75/19.35)	SRQNIVNKIMDTLKKH
  458-  473 (28.63/17.56)	SRQKNIDKLLETLKKH
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01180 with Med15 domain of Kingdom Viridiplantae
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