<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01179

Description BnaA06g10400D protein
SequenceMDSNNWRLSIPNGESAAINNGEWRKQLPPDSRQKIVNKIMETLSRHLPSSGPEGINDLRRIAARFEEKTFSGAVNQTDYLRKISMKMLTMETKSQNAAGSSSTTTDANNTTSMDSIPNNQGQLLPNNQSQAPQPLMSQTMQSNTASGMAGSTGLPSSMQPVSSIANNNVTSVVNQNSSMQNVAGVLQDSSGQHGLSSNMISGSQRQMLGRPHIMSSQQQQQPQGGQYLYQQQLLRQNFQSGNVPNPIQQQQQNVLQPNQMHSSQQPGSTTSATQPSAVNSAPIQGLHTNQQSSPQFSSQQTTSQTILRQQQSSLLRQHPQSQQASGIHQQQTSLPQQSISPQQQAQMMRQQAASGSGIQQKQMMGQHVVGDMQHQHQQSLLNQQNNIMNMQQQQKQHPPAQQQLMSQQNSLQATTQQPLGTQSNVAGLQQPQQQFLSSQTNQQSVHMLSQPTAALQRTHQAGHGLFPSQGQQSQNQPSQQQMMPLQSHHQQLQQPNLLQQDVQQRLQSSGQVTGSLLPPQNVVDQQRQLYQSQRTLPEIPSSSLDSTAQKESVNAVDWQEEVFQKIKIMKDAYLPDVTEIYQRVIAKLQQMDSLPQQQRSEQFEKLKQFKTMLERMMQFLSVSKSSIMPPLKNKVAIYEKQIIDFVTAHRPRKPVQQGQLPQSQMQPMQQQSSQNGNHSHDSQANPQMQSMSMPRAQQSSLENAQYNVLSSRPLASAPQQNIPCSVPGSSLELGQGNALNNSQQVAMRSMQQNNYQEVNNSSASAQRSQLPVTSPQLLPGGSPQMTQQHLSPQVDQKNVISSVNKNGTPVQPANSPFVVPSPSTPLAPSPMQVASEKPSGASSLSMGNTARQQATGTQGVVQSIAFGTPGISASPLLQEFISPEGNNLNPLTSTFGKPNATELPIERLIRAVKSISPQSLSSALSDIGSVVSMVDRIAGSAPGNGSRASVGEDFVAKTKCRLQARNFMAQEGMTPTKKMKRGTTAMPLSVYSLEGSVGDNCKQFACSETSDLESTATSVGKKARTETEHALSEEIKEINQRLIDTVVEISDDEDAADSSEGATASKGCEGTTVRLSFIAVSLSPALKAHLSSTQMSPIQSLRLLVPCSYPNVSPSLLYKLPVETSKENGDLSSKAMARFNILLRSLSQPMSLKDIANTWDACARTVICEYAQRFGGGTFSSKYGTWEKFVAAS
Length1193
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.04
Grand average of hydropathy-0.689
Instability index68.43
Isoelectric point9.21
Molecular weight130092.89
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01179
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     860.07|     131|     132|     295|     425|       1
---------------------------------------------------------------------------
    9-  122 (102.90/21.46)	.........SIPNGESAAI.NNGE.............WRKQLP.PDSRQKIV.NKimETL......SRHLPSSGP...EGI...................ndlrriaaRF..........EEKTFSgavnQTdY..LRKISMKMLTMET........KSQNAAG........................SSS...TT....TD.....A....NNTTSMDS..........IPNN.Q..GQ..........
  123-  220 (118.19/25.69)	.........LLPNNQS......................Q......APQPLMS.Q....TM..............Q...SNT...........................ASgmagstglpSSMQPVS.....S.I..ANNNVTSVVNQNS........SMQNVAG....VLQ.......DSS..G..QHGLS................SNMI.....SGS.............QR.QMLGRpHIMSSQQQQ
  229-  292 (62.61/10.31)	Y......QQQLLRQ......NFQS.............G..NVPnPIQQQ....QQ..NVLQPnqmhSSQQPGSTT...SAT.........................................................................................Q.......PSAvnSAPIQGLH...TN....QQ.....S..........................................
  295-  375 (122.45/26.87)	............................................................................................................QF.........SSQQTTS....QT.I..LRQQQSSLLRQHP........QSQQASG....IHQ.......QQT..SLPQQSIS...PQ....QQ.....AQMMRQQAASGSG..........IQQK.QMMGQ.HVVGDMQHQ
  376-  514 (164.34/38.46)	H......QQSLLNQQNNIM.NMQQ.............QQKQHP.PAQQQLMS.QQ..NSLQA....TTQQPLGTQ...SNV...................aglqqpqqQF.........LSSQTNQ....QS.VhmLSQPTAALQRTHQaghglfpsQGQQSQN....QPS.......QQQ..MMPLQSHH...QQ...lQQ.....PNLLQQD................VQQRlQSSGQ..VTG.....
  515-  648 (107.42/22.71)	.........SLLPPQ.....NVVD.............QQRQLY.QSQRTLPEiPS..SSLDS....TAQ.....K...ESV..........................nAV.........DWQEEVF....QK.I..KIMKDAYL...............PDVTE....IYQrviaklqQMD..SLPQQQRS...EQfeklKQfktmlERMMQFLSVSKSSimpplknkvaIYEK.QII.......DFVTA
  649-  737 (106.99/22.59)	HrprkpvQQGQL.PQSQMQ.PMQQ.............QSSQNG.NHSHD..S.QA..NPQMQ....SMSMP..................................................................RAQQSSL..ENA........QYNVLSS......R.......PLA..SAPQQNIPcsvP......................GSS..........LE.....LGQ....GN....
  738-  878 (75.17/13.79)	.........ALNNSQQVAMrSMQQnnyqevnnssasaQRSQLP.VTSPQLL..PG..GSPQ.....MTQQHLSPQvdqKNVissvnkngtpvqpanspfvvpspstplAP.........SPMQVAS....EK.....PSGASSLSMGNT........ARQQATGtqgvVQS.......IAF..GTPGISAS...PL....LQ................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     179.30|      64|     107|     918|     988|       2
---------------------------------------------------------------------------
  918-  988 (94.99/74.96)	QSLSSALSDIGS...............................VVSMVDRIAGSAPGNGSRASVGEDfvaKTKCRLqarNFMAqEGMTPTKKMKRGTTAM.PL
 1003- 1098 (84.30/49.51)	QFACSETSDLEStatsvgkkartetehalseeikeinqrlidtVVEISDDEDAADSSEGATASKGCE...GTTVRL...SFIA.VSLSPALKAHLSSTQMsPI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01179 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AHRPRKPVQQGQLPQSQMQPMQQQSSQNGNHSHDSQANPQMQSMSMPRAQQSSLENAQYNVLSSRPLASAPQQNIPCSVPGSSLELGQGNALNNSQQVAMRSMQQNNYQEVNNSSASAQRSQLPVTSPQLLPGGSPQMTQQHLSPQVDQKNVISSVNKNGTPVQPANSPFVVPSPSTPLAPSPMQVASEKPSGASSLSMGNTARQQATGTQGVVQSI
2) AINNGEWRKQLPPDSRQKIVNKIMETLSRHLPSSGPEGINDLRRIAARFEE
3) RKISMKMLTMETKSQNAAGSSSTTTDANNTTSMDSIPNNQGQLLPNNQSQAPQPLMSQTMQSNTASGMAGSTGLPSSMQPVSSIANNNVTSVVNQNSSMQNVAGVLQDSSGQHGLSSNMISGSQRQMLGRPHIMSSQQQQQPQGGQYLYQQQLLRQNFQSGNVPNPIQQQQQNVLQPNQMHSSQQPGSTTSATQPSAVNSAPIQGLHTNQQSSPQFSSQQTTSQTILRQQQSSLLRQHPQSQQASGIHQQQTSLPQQSISPQQQAQMMRQQAASGSGIQQKQMMGQHVVGDMQHQHQQSLLNQQNNIMNMQQQQKQHPPAQQQLMSQQNSLQATTQQPLGTQSNVAGLQQPQQQFLSSQTNQQSVHMLSQPTAALQRTHQAGHGLFPSQGQQSQNQPSQQQMMPLQSHHQQLQQPNLLQQDVQQR
648
17
81
864
67
505










Molecular Recognition Features






MoRF SequenceStartStop




NANANA