<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01177

Description BnaC09g37710D protein
SequenceMAMKKPKVEQGEEAKTLSTQIPDDKEGLIDFMDQRANSIEALKDQLSNLERKLAEERRLMADAEAKFLRVDRVENKKNVPGKTGSLLGIAEFWTERDKVKKTATNGTSTPHPPSEMKPLKMPSIILPPSFKRKASAPARPEASETAQHVATTDSDVPKEVRNGSETKRSRTVVPNEVVRETQSQAKPRIRVSSNIPGQAAQQEKSEFHGHEELIALIGRSSLRATIESRTLAMLPSGHTKRMRSLALSPSNRDLFATSALDGVVHFWKLQSDSRSSATLFKTINRVEVDQKRWAEDIAWHPHKSALFSVYTADEGHAQISALYLNEARETCESKFLKDRPHIKGLINRIMFTPWDDPCFITGGCDHAVVLWREQCENNAWKSRLLHKDLHTSAVMGVAGMRHNNLVLSCGDDRRFVGFDAREEKVTFKHRLDNKCTNLLPNPRDVNLVMLQTRQLDRQLRLYDVRLPQTELFSFGWKQESSESQSALINQSWSPDGLHISSGSSDPAIHIFDIRYNAASPSLSIKAHKKRVFKAEWHSSNQLLVSISSDLEIGIHKLCPKTQFQLLWQEPVAIKSTVFGSPQNGIVLNHMIFRLRLFSPGDYSQPSPWACLPSSVSVSSMASPEEMVDASETPSTPKSTYKDPDVGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIEYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRSAMAHPANKELAHRQQFYYWKNYRNNRLKHILPRPLPEPVAPQPPPVPSSSLPPAPPATAAPSPSPMQYNNMLAKNETRNMVSAGIDRRKRKYVLLSSS
Length816
PositionMiddle
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.08
Grand average of hydropathy-0.571
Instability index59.29
Isoelectric point9.23
Molecular weight92749.61
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01177
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     193.16|      44|      46|     328|     371|       1
---------------------------------------------------------------------------
  223-  266 (54.21/31.87)	..................R.ATIESRTLAM...LPsgHTKRM.RSLALSPSNRDLFATSALDGVVHF
  267-  324 (38.51/20.53)	WklqsdsrssatlfktinRvEVDQKRWAEDiawHP..HKSALFS..VYTADEGHAQIS.....ALYL
  327-  370 (81.19/51.35)	A.................R.ETCESKFLKD...RP..HIKGLINRIMFTPWDDPCFITGGCDHAVVL
  371-  389 (19.26/ 6.62)	W.................R.EQCENNAWKS...RL..LHKDL.........................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     163.45|      36|      46|     689|     724|       2
---------------------------------------------------------------------------
  649-  673 (33.37/15.78)	..........RFLLE...LEFIQCLANPTYIHYLAQNR
  689-  724 (70.14/41.27)	YWQ..RPEYIKFIMYPHCLYFLELLQNPNFRSAMAHPA
  736-  772 (59.94/34.20)	YWKnyRNNRLKHIL.PRPLPEPVAPQPPPVPSSSLPPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.03|      19|      41|     492|     510|       3
---------------------------------------------------------------------------
  492-  510 (36.53/23.67)	WSPDGLHISSGSSDPAIHI
  536-  554 (33.49/21.11)	WHSSNQLLVSISSDLEIGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.77|      21|      41|     401|     421|       4
---------------------------------------------------------------------------
  401-  421 (39.01/26.83)	RHNNLVL..SCGDDRRFVGFDAR
  443-  465 (31.76/20.57)	RDVNLVMlqTRQLDRQLRLYDVR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01177 with Med31 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DKVKKTATNGTSTPHPPSEMKPLKMPSIILPPSFKRKASAPARPEASETAQHVATTDSDVPKEVRNGSETKRSRTVVPNEVVRETQSQAKPRIRVSSNIPGQAAQQEKSEFHGH
2) MAMKKPKVEQGEEAKTLSTQIPDDKEGLID
3) PQPPPVPSSSLPPAPPATAAPSPSPMQYNNMLA
97
1
759
210
30
791










Molecular Recognition Features






MoRF SequenceStartStop




1) YYWKNYRN
735
742