<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01174

Description BnaC02g38070D protein
SequenceMEGYSNWKPNEQGRYSLANNANDWRSTHEFDLRKRVIIAIVEKLKICFPKHSQNDINNTACKFEGKIYGMATDKSDYLRKISEKIMVFDKKFKSVQSGSLVNEPNTTQDPAAQAPNQGPSLPTSLPYTQTPTIQQWFPQGNIHESSGFSNQVPITVSAAHNLNIQMGEGVHSHLRSGSQRQIQGRKQFCTQPQQQLQSYNDMFQGQVNQQLLKENIHHLQLPYMQQQQHQQSVLKQPIHQHLPHHTSLSTIQQSFPQTSVHSSLTSSGQQNSQYLPRHQFPTQRVQSSHQQHMYVQSQEQKQQEYDQLISQLMNGQDTLQNHLTSQQNNIVSFQEMGQQSSNPHNMYLQQHLYSHSNNASSSLASQQQTYMPGGQSGNFNVYESSLLGTQGQDLGQSQPMMLQQYQQPQNIILQQHLDDTQRLHEAVSLHQTQNVANQQNQPYQLQRASPANPSSNTVNASGGDWQEETYQKIKALKEKYLPVLSTLFQKVSDKLGEVDSLPQQNMQNEPIEKLRAAKSMLELVIMFLNVHRDSISESHRDRFSLYEEQVLRFTKNQQTVTQRPMQHQQSPSGHNQHSNISLAQSCMFHQNQFHHLNQLLQSQQQQQQPQTNQQQPQIQNYSSPQFVDHQILSTTFHSTGTSSQSLAPSPNLVDLEKPIYVESLVLHDYQLQTAPQEQPIDRLIKAVHSVTTTPPLDIISQTGSYKRLSSLESEADSTASSGSKAQKIEPGWALLLQEIKDINGSLVETVVNICNEEVYPSEVTPGTIVTCSYSPVALSDTFEAHYKSGHISQIQPLRLLVPVNYPSSPILLLEKLSYDSSLHKYDDLSARTRSRFGLSMKEFSEPMSLKEIAQAWDVCARETMAEYAERHGGCTFSSNYGHWDPVLGAS
Length890
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.771
Instability index63.63
Isoelectric point6.38
Molecular weight100938.98
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01174
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     347.24|      49|      53|     310|     358|       2
---------------------------------------------------------------------------
  168-  201 (34.23/ 8.82)	.....EGVHSHLRSgSQ..RQI..........QGRKQFCTQP............QQQLQSY.N.....D.............
  227-  264 (43.13/13.28)	........QQH.....Q..QSVLK........QPIHQHL..PHHT....SLstiQQSFPQTSV.....H..........SSL
  265-  312 (48.54/15.98)	TsSGQQNSQ.YLPR.HQ.......F.......PTQRVQSS..H...........QQHMYVQSQ.....EqkqqeydqliSQL
  313-  363 (83.32/33.41)	M.NGQDTLQNHLTS.QQ..NNIVSF.......QEMGQQSSNPHNM....YL...QQHLYSHSN.....N........asSSL
  364-  410 (52.65/18.04)	A.SQQQTYMPGGQS.GN..FNVYESsllgtqgQDLGQ..SQP..M....ML...QQ..YQQPQ.....N.............
  413-  452 (34.33/ 8.87)	.......LQQHLDD.TQrlHEAVSL.......HQT.QNVANQQNQ....PY...QLQRASPAN...................
  554-  600 (51.05/17.24)	T.KNQQTV.......TQ..R............PMQHQQSPSGHNQhsniSL...AQSCMFHQNqfhhlN..........QLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.86|      15|      18|     664|     681|       4
---------------------------------------------------------------------------
  664-  681 (22.07/17.05)	LVLHDYQLQTAPqeqPID
  683-  697 (25.79/12.08)	LIKAVHSVTTTP...PLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.16|      19|      20|      99|     118|       6
---------------------------------------------------------------------------
   99-  118 (31.03/17.48)	SLVNEPNTTQDPAAQA..PnQG
  120-  140 (32.13/14.06)	SLPTSLPYTQTPTIQQwfP.QG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01174 with Med15 domain of Kingdom Viridiplantae
Unable to open file!