<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01173

Description BnaA08g19480D protein
SequenceMSSEMKQLIVVAEGTAALGPYWQTIVSDYLHKIIRSFCGSELNGERNPVSSVELSLVIFNSHGSYCGCLVQRSGWTRDVDIFLHWLSSIQFAGGGFSEAATAEGLAEALMMFPPPPGQAQPSNDLKRHCILITASNPYSLPTPVYRPKLQNAERNENGDALPESRLSDAETVASYFSRCAVSLSVVCPKQLPKIRALYNAGKLNPQSSDLSIDTVKNTFYLVLISENFVEARAALSHSATNVPQTQSPVKMDRATVAPSLPVTGPPPASLPSVSANGPILNRQPVSVGPVPTATVKVEPSTVSSMAAVPTFPHIPSSVARPAAQAMPSVQTSSASSVSQEMVTNAENAPDVKPVVTGMTPPLRTGPPGNVNLLNNLSQPPSQTAFSSGQQGNTSMAGSGALMGNAQAGQSPGPNNSFSPQTTSNVTSNLGVSQPMPAMNQGSHSGGQMMQGGISMNQNMITSLGQGNVSSGTGGMMPTPGVGQQAQSGIQQLGGSNSSAPNMQLSQASSGALQPSQSKYVKVWEGNLSGQRQGQPVLITRLEGYRNATASDSLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQDKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQITNQQQQQHQQQQQQQQQQQIHQQQQQQQIQQQQQHQQLPQLQQQQHQLSQLQHHQQQHQQQHQLSQLQQHQQQQQTSPLNQMQQQTSPLNQMHQQTSPLNQMQQQTSPLNQMPQQQPQQMVGSGVMGGQAFAQGPGRSQQGGGGQPNMPGAGFMG
Length796
PositionUnknown
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.04
Grand average of hydropathy-0.487
Instability index58.77
Isoelectric point8.82
Molecular weight85434.06
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01173
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     334.28|      57|      57|     377|     433|       3
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  230-  291 (57.78/19.03)	EARAA.LSHSATN..V.....PQTQSPVKmDRATVAP.slpvT.GP................................PP..ASLPSVSA..NGpilNRQ..P..............VSVGP.VP
  292-  343 (48.46/14.75)	TATVK.VEPSTVSSMAavptfPHIPSSV...............aRP................................AA..Q.AMPSVQ..TS...SAS.................SVSQEMVT
  344-  375 (37.82/ 9.87)	NAE...NA.............PDVKPVVT.......G.....M.TP................................PL..RT....GP..PG...NVN..L..............LNN.....
  377-  403 (32.36/ 7.37)	..........................................S.QP................................PS..QTAFSSGQ..QG...NTS..M..............AGSGALMG
  404-  477 (71.95/25.53)	NAQAG.QSPGPNNSFS.....PQTTSNVT.SNLGV.......S.QP...............................mPAmnQGSHSGGQmmQG...GIS..MnqnmitslgqgnvsSGTGGMMP
  484-  539 (54.25/17.41)	QAQSGiQQLGGSNS...........S..A.PNMQLSQ.assgA.LQ................................PS..QSKYVKVW..EG...NLSgqR..............QGQPVLIT
  540-  630 (31.66/ 7.05)	RLEGY.RNATASDSLA..anwPPTMQIVR.L...ISQdhmnnK.QYvgkadflvframnqhgflgqlqdkklcaviqlPS..QTLLLSVS..DK...ACR..L..............I..GMLF.
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.08|      17|      46|     699|     715|       5
---------------------------------------------------------------------------
  661-  678 (30.42/ 9.91)	IHQQQQQQQIQQQQ.................qHQQ
  702-  736 (26.26/ 7.46)	QHQLSQLQQHQQQQqtsplnqmqqqtsplnqmHQQ
  744-  760 (33.39/11.66)	QQQTSPLNQMPQQQ..................PQQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.11|      10|      15|     768|     777|       6
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  768-  777 (20.46/ 9.30)	GGQAFAQGPG
  784-  793 (21.64/10.32)	GGQPNMPGAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.25|      36|      42|     139|     176|      10
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  139-  176 (53.78/40.33)	SLPTPVYRPKLQnAERNeNGDALPESRLSDAETVASYF
  184-  219 (62.47/37.71)	SVVCPKQLPKIR.ALYN.AGKLNPQSSDLSIDTVKNTF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01173 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSHSATNVPQTQSPVKMDRATVAPSLPVTGPPPASLPSVSANGPILNRQPVSVGPVPTATVKVEPSTV
2) QQQQHQQLPQLQQQQHQLSQLQHHQQQHQQQHQLSQLQQHQQQQQTSPLNQMQQQTSPLNQMHQQTSPLNQMQQQTSPLNQMPQQQPQQMVGSGVMGGQAFAQGPGRSQQGGGGQPNMPGAGFMG
3) SMAAVPTFPHIPSSVARPAAQAMPSVQTSSASSVSQEMVTNAENAPDVKPVVTGMTPPLRTGPPGNVNLLNNLSQPPSQTAFSSGQQGNTSMAGSGALMGNAQAGQSPGPNNSFSPQTTSNVTSNLGVSQPMPAMNQGSHSGGQMMQGGISMNQNMITSLGQGNVSSGTGGMMPTPGVGQQAQSGIQQLGGSNSSAPNMQLSQASSG
235
672
304
302
796
510










Molecular Recognition Features






MoRF SequenceStartStop




NANANA