<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01171

Description BnaA09g47850D protein
SequenceMSLSEVQKPKAPQTNWSEHVKVLDGSPSSVTKHLSSNFLYALESQKPGRCRDMAARSIAFPSVNVHTLAHPQIAKAWRALSSLSINKTYLRPGITPPVDDSGTNGSYSARESSTVKVTSSTGGSFYSNNQQNQSQMGVPGTGRYSHSFPSSVPGDDKRAAEKFSRVNDEVREPETSCAHSNGVEKPFRKSALAAEQLESGEACLDEINDDILQNIDVDQILMEHYQSTSTPQPSVSSFPLRTPPVDRSASSREEEFCLPPELCCNCSHGIKLGLCPEAPDRIQELRQERLQLKKQIQQLENHIRDKERETSKFLSSTATPFQYETPKATNRNMDDPQTDSRAEFSEQGGYASGSWNMPRDSSFSVDRYGLSSAPVEREQYVPRIIDVKYTEGSSDKKWSSREFSWTKKLEVSNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICQGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLKIFQELSYEHSKYKLLYVTPEKVAQSDSLLRHLDSLNSRGLLARFVIDEAHCVSQWGHDFRPDYQNLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLKEFGHKAAFYHGSIEPTQRALVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRASCVLYYGYGDYIRVKHMISQGGVDQSPMAGGYNRVASSARLLETNSENLHRMLRYCENEVDCRRFLQLVHFGEKFDSTNCKNTCDNCCSSQSLIDKDVTLITRQLVELVKQTGERFSSSHILEVYRGSLNQMVKKHRHETLQFHGAGKQLSKIEVSRILHYLVTEDILVEDVRKSDMYGSVSSLLKVNNAKAASLFSGSQTIMMRFPSSVKVLKTTKPAPTPAKAPVTSADTPPEDLNLSAIMYTALRKLRTLLVKEAPDGVMAYHIFGNATLQQISKKIPRTKEELLEINGLGKAKVTKYGDRLLETIETTVNEYYGTSNKDSMISPDTGKRRRDENTSPNVADDDDDFAEMSIQSCKKTARNKSNEIGMVVEKLDFDFEDEDGSEIRPEGRVLPW
Length1136
PositionUnknown
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.524
Instability index48.50
Isoelectric point7.14
Molecular weight127254.38
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01171
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     446.21|     128|     144|     744|     887|       1
---------------------------------------------------------------------------
  647-  784 (139.36/138.66)	.........YCLSRMDCEKVAeKLKEFGHKaaFYHGSIEPT......QRALVQKqwskdeiNIICAT..VAFGM.GINKPDVRF.......VIHHSLPKSIEG...YHQECGRAGRDGQrascvlyygygdyiRVKH.MISQG....GVDQSPMaggYNRVASsarLLETN
  785-  927 (195.63/157.57)	SENLhrMLRYCENEVDCRRFL.QLVHFGEK..FDSTNCKNTCDNCCSSQSLIDK.......DVTLIT..RQLVE.LVKQTGERFSSSHILEVYRGSLNQMVKK...HRHETLQFHGAGK......qlskievsRILHyLVTEDilveDVRKSDM...YGSVSS...LLKVN
  938- 1034 (111.22/76.75)	SQTI..MMRF.PSSVKVLK........TTK..PAPTPAKAPVTSADTPPEDLNL.......SAIMYTalRKLRTlLVKEAPDGVMAYHIFG..NATLQQISKKiprTKEELLEINGLGK....................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     381.86|     105|     145|     155|     262|       2
---------------------------------------------------------------------------
   30-  115 (88.82/53.62)	............................VTKHLSSNFLyALESQKPGR.CRDMAARSIaFPSVNVH..TLAHPQIAKAWRAlsslSINKTY.....LRpgiTPPV...................DDSGTNGSYSARESSTV
  155-  262 (172.24/121.52)	DDKRAAEKFSRVNDEVREPETSCAHSNGVEKPFRKSAL.AAEQLESGEaCLDEINDDI.LQNIDVDqiLMEHYQSTSTPQP....SVSSFP.....LR...TPPV...................DRSASSREEEFCLPPEL
  305-  409 (120.80/75.88)	DKERETSKFLSSTATPFQYETPKATNRNMDDP..QTDS.RAEFSEQGG........................YASGSWNMP....RDSSFSvdrygLS...SAPVereqyvpriidvkytegssDKKWSSR..EFSWTKKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.46|      47|     138|     411|     466|       3
---------------------------------------------------------------------------
  411-  466 (68.67/65.18)	VSNkkvFGnHSFRPNQRE..IINATMSGSDVFVLMPTGggkslTYQLPALICQGITLV
  554-  602 (76.79/48.33)	VSQ...WG.HDFRPDYQNlgILKQKFPNIPVLALTATA.....TASVKEDVVQALGLV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01171 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSSTATPFQYETPKATNRNMDDPQTDSRAEFSEQGGYA
2) TSSTGGSFYSNNQQNQSQMGVPGTGRYSHSFPSSVPGDDKRAAEKFSRVNDEVREPETSCAHSNGVEK
3) YGTSNKDSMISPDTGKRRRDENTSPNVADDDDDFAEMSIQSCK
314
118
1056
351
185
1098










Molecular Recognition Features






MoRF SequenceStartStop




1) EIRPEGRV
1126
1133