<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01168

Description BnaC08g42280D protein
SequenceMSLSEVQKPKAPQTNWSEHVKVLDGSPSSVTKHLSSNFLYALESQKPGRCRDVAARSIAFPSVNAHTLAHPQIAKGWRALSSLSINKTYLRPGITPPVDDSYSARERSNVKVTSSTDGSFYSNNRQNQSQMGVPGTGRYSHSFPSSVPGDDKIAAEKFSRVNDEVREPETNCAHSNGVEKPFRNSALAADQLESGEACLDEIDDDDILQNIDVDQILMEHYQSTSTPQPSVSCFPLRTPPVDRSSSRREEECCLPPELCSNCSHGLKLGLCPEASTHLEQMKNALIAISNELLDDDTDLSPDRIQELRQERLQLKKQIQQLENHIQDEERETSNFLSSTATRSFQYETPTATNRNMDPPQTDSRAQFSEQGRYASDSWNMPRDSSFSVDRYGLSSAPLEREQYVPRIIDVTYTEGSNDKKWSSREFSWTKKLEVSNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICQGITLVISPLVSLIQDQIMNLLQANISAASLSAGMEWAEQMKIFQELSYEHSKYKLLYVTPEKVAQSDSLLRHLDSLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDFDKFIRENHFDECGIIYCLSRMDCEKVAEKLKEFGHKAAFYHGSIEPTQRALVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRASCVLYYGYGDYIRVKHMISQGGVDQSPMAGGYNRVASSARLLETNSENLHRMLRYCENEVDCRRFLQLVHFGEKFDSTNCKNTCDNCCSSQSLVDKDVTLITRQLVELVKQTGERFSSSHILEVYRGSLNQMVKKHRHETLQFHGAGKQLSKIEVSRILHYLVTEDILVEDVRKSDMYGSVSSLLKVNNSKVASHFSGSQTIMMRFPSSVKVLKPTKPAPTPAKAPVTSADTPPEDLNLSAIMYTALRKLRTLLVKEAPDGVMAYHIFGNATLQQISKKIPRTKEELLEINGLGKAKVTKYGDRLLETIETTVNEYYGTSNKDSRISPDSGKRRRDENTSPNVADDDDDFAEMSIQSCKKTARNKSNEIGMVVEKLDFDFEDEDGSEIRPEGRVLPW
Length1159
PositionUnknown
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.547
Instability index49.47
Isoelectric point6.37
Molecular weight130220.28
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01168
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     482.50|     133|     142|     769|     910|       1
---------------------------------------------------------------------------
  670-  760 (90.54/60.73)	................................................YCLSRMDCEKVAeKLKEF..GHKaaFYHGSIEPT......QRALVQKqwskdEINIIcaT..VAFGM.GINKPDVRF.......VIHHSLPKSIEG...YHQECGRAGRDGQ
  769-  910 (207.96/187.56)	GYGDYIRVKHMISQgGVDQSPMaggYNRVASsarLLETNSENLHRmlRYCENEVDCRRFL.QLVHF..GEK..FDSTNCKNTCDNCCSSQSLVDK.....DVTLI..T..RQLVE.LVKQTGERFSSSHILEVYRGSLNQMVKK...HRHETLQFHGAGK
  919- 1057 (184.01/138.86)	RILHYLVTEDILVE.DVRKSDM...YGSVSS...LLKVNNSKVAS..HFSGSQTIMMRFP.SSVKVlkPTK..PAPTPAKAPVTSADTPPEDLNL.....SAIMY..TalRKLRTlLVKEAPDGVMAYHIFG..NATLQQISKKiprTKEELLEINGLGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.93|      15|     140|      92|     106|       2
---------------------------------------------------------------------------
   92-  106 (30.84/18.05)	PGITPPVDDSYSARE
  235-  249 (30.09/17.43)	PLRTPPVDRSSSRRE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.70|      44|     136|     440|     489|       3
---------------------------------------------------------------------------
  440-  489 (68.55/66.60)	FGnHSFRPNQRE..IINATMSGSDVFVLMPTGggkslTYQLPALICQGITLV
  580-  625 (71.15/50.90)	WG.HDFRPDYQSlgILKQKFPNIPVLALTATA.....TASVKEDVVQALGLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.28|      35|      87|     168|     206|       5
---------------------------------------------------------------------------
  168-  206 (55.27/46.47)	PE..TNCAHsnGVE...KPFRNSALaaDQLESGE.ACLDEIDDDD
  256-  296 (50.01/30.29)	PElcSNCSH..GLKlglCPEASTHL..EQMKNALiAISNELLDDD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01168 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSSTATRSFQYETPTATNRNMDPPQTDSRAQFSEQGRYA
2) TSSTDGSFYSNNRQNQSQMGVPGTGRYSHSFPSSVPGDDKIAAEKFSRVNDEVREPETNCAHSNGVEK
3) YGTSNKDSRISPDSGKRRRDENTSPNVADDDDDFAEMSIQSCK
336
113
1079
374
180
1121










Molecular Recognition Features






MoRF SequenceStartStop




1) EIRPEGR
1149
1155