<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01167

Description BnaA01g14500D protein
SequenceMSRSPDTLALPPPPPTFPPPSHTVFVALSESRKNKNVVTWALEKFAPEANVGFKLLHIHPRITSVPTPMGNTIPISEVRDDVVAAYRQEVLWQAEEVLKPYKKMFERRKVAVEVHVIESDNVAAAIAEVVSRNSIERLVIGGSSRSFFSRKADMCSAISALVPNFCTVYVVSKGKLSCVRPSDSDGNATIRDDGSERTDSSSGSSGPNSESTDGVSSALDSQSQSRALSLPVRRFQHVPAIGRQASVPMDTSSVGSDDTRCMSMDAEEAKDVSSINRSSTDTTSRWTPRLRDYEERKDAMSSSSSNREYANAGGKFSWTGMVIDTTHSRASQQASNMSDNLSEHSYTDNQVNLSFEVEKLRAELRHVQEMYTAAQTETFDASRKLGELNQRRLEEAIKLEELKLKEYEARELAEKEKQNFEKAKRDAENMRERAEREIAQRREAERKAARDAKEKEKLEDTLGSPRLQYQHFTWEEIVAATSSFSEELKIGMGAYGSVYKCNMHHTTAAVKVLHSAENGLSKQFQQELEILSKIRHPHLVLLLGACPEQGALVYEYMENGSLEDRLFQVNNSPPLPWFERVRIAWEVAAALVFLHKSKPKPIIHRDLKPANILLDHNFVSKVGDVGLSTMVQVDPLSTKFTIYKQTSPVGTLSYMDPEYQRTGMISSKSDVYSFGMIVLQLLTAKPPMALTHLVESAMDSNDEFLKILDQKAGNWPVEETRELTSLALCCTELRGKDRPDLRDQILPALESLKKVAEKARNSISSVPTQPPFHFLCPLLKDVMNEPCVAADGYTYDRRAIEEWFEEHNTSPMTDSPLLSKNLLPNYTLYTAIMEWRSRLK
Length840
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.514
Instability index50.00
Isoelectric point6.07
Molecular weight94308.53
Publications
PubMed=25146293

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01167
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      75.38|      23|      23|     405|     427|       1
---------------------------------------------------------------------------
  383-  409 (24.21/14.16)	RKLGELNQRRLEEAiKLEElklKEYEA
  410-  435 (31.94/21.18)	RELAEKEKQNFEKA.KRDAenmRERAE
  436-  456 (19.23/ 9.63)	REIAQR.REAERKA.ARDA.keKE...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     108.96|      27|      29|     265|     292|       2
---------------------------------------------------------------------------
  193-  211 (25.63/ 8.22)	DGSERTDS...SS.GSSGPNSES.........
  265-  291 (46.20/23.04)	DAEEAKDV...SSINRSSTDTTSR..WTPRLR
  292-  323 (37.13/16.50)	DYEERKDAmssSSSNREYANAGGKfsWTGMVI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     171.58|      53|     224|     520|     579|       7
---------------------------------------------------------------------------
  520-  579 (84.53/62.13)	LSKQFQQELEILSKI............RHPHLVLLlgaCPeqgaLVYEYMENGSLEDRLFQVNNSPPLPWFE
  741-  805 (87.05/48.98)	LRDQILPALESLKKVaekarnsissvpTQPPFHFL...CP....LLKDVMNEPCVAADGYTYDRRAIEEWFE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.17|      10|      23|     346|     356|       8
---------------------------------------------------------------------------
  346-  356 (14.20/13.18)	YTDNQVNlSFE
  371-  380 (17.96/11.05)	YTAAQTE.TFD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01167 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEKEKQNFEKAKRDAENMRERAEREIAQRREAERKAARDAKEKEKLED
2) HVPAIGRQASVPMDTSSVGSDDTRCMSMDAEEAKDVSSINRSSTDTTSRWTPRLRDYEERKDAMSSSSSNREYA
3) MVIDTTHSRASQQASNMSDNLSEHSYTDNQ
4) PSDSDGNATIRDDGSERTDSSSGSSGPNSESTDGVSSALDSQS
413
237
321
181
460
310
350
223










Molecular Recognition Features






MoRF SequenceStartStop




NANANA