<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01166

Description BnaA09g41420D protein
SequenceMWMAKSNSVGIKEGGGSTGVVAVAIDKDKSSQHALKWAVDHLLQRGQSVILVHVKLRPSPLNNASSLHASSAKMSQDSSLICRDPEGASKEIFLPFRCFCTRKDIQCKDVLLEEYDVAKALVEYANQAAVEVLVVGSSNKGGFLRFNKPADVPGTITKTAPDFCTVYVISKGKISTMRSASRSAPNIAPLRTPIQPPSLKPPQPVPSTATNMRADRRSFETQQRRSTEDRRSMEDQQRRSMEDLQRRSMEDQSDSFRSPFTRRGNGRSYGDLSVPESDISFVSSGRASIDRIFPNLYDNNDPNRTPPRLSNYSDMDYGPSLESSNYGRRSLDVSSPTDLSTGSFESERFSSASAMDDVESEMRRLKLELKQTMEMYSTACKEALTAKQKATELQRWKLEEERKLEEARLAEEAALAIAEKEKAKSKAAMEAAEAAQRIAELESKKRVNAEMKALKESDEKTKALNALANSDVRYRKYSIEEIEHATEFFAEKYKIGEGGYGPVYKCYLDHTPVAVKILRADAAQGMSQFQQEVEVLSCIRHPNMVLLLGACPEGGCLVYEFMANGSLEDRLFRLGNSPPISWQMRFRIAAEIGTGLLFLHQAKPEPLVHRDLKPGNILLDRNFVSKISDVGLARLVPPSVADTVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIIFLQLITAKPPMGLTHYVERALEKGTLPDLLDPAVPDWPVEDTAEFAKLALQCAELRRKDRPDLAKVILPVLNRLRTLADESTESLLVINSPGPSPNSSQTSVKLEQMSGASISVPQ
Length797
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.448
Instability index57.10
Isoelectric point7.13
Molecular weight88388.51
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01166
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     162.97|      51|      54|     149|     202|       1
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  149-  202 (84.85/58.77)	PadvPGTITKTAPD...FCTVYVISKGKISTMRSASR.SAPNIAPLRTPIQPPSLKPP
  205-  259 (78.12/46.97)	V...PSTATNMRADrrsFETQQRRSTEDRRSMEDQQRrSMEDLQRRSMEDQSDSFRSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     140.04|      49|      49|     382|     430|       2
---------------------------------------------------------------------------
  348-  374 (27.42/13.28)	RFSSASAMD................dVESEMRRLKLELKQTME..............................
  382-  421 (53.35/32.53)	..................EALTAKQ.KATELQRWKLEEERKLEEARLA..............EEAALAIAEKE
  422-  493 (59.26/36.92)	KAKSKAAMEaaeaaqriaELESKKR.VNAEMKALKESDEKTKALNALAnsdvryrkysieeiEHATEFFAEKY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.01|      27|      49|     544|     572|       3
---------------------------------------------------------------------------
  544-  572 (44.53/39.59)	MVLLLGACPEGgcLVYEFMANGS.LEDRLF
  596-  623 (45.48/31.56)	LLFLHQAKPEP..LVHRDLKPGNiLLDRNF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.76|      19|      22|     304|     323|       4
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  304-  323 (30.91/23.16)	RTPPRLSNYSDMDYGpSLES
  328-  346 (31.85/18.01)	RRSLDVSSPTDLSTG.SFES
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01166 with Med32 domain of Kingdom Viridiplantae
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