<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01153

Description BnaC04g50550D protein
SequenceMALVTPIPAMSERAGSMRFHGITTTSPGSRSSRSSATEEPVSRLIEEKIFVAVDKHVAKSKSTLVWALQNTEGKKICVVHVHQPSQMIPVMGAKFPVSSVKEEEVKVFREKEREKVHMILDEYLRICHQRGVRAEKMFIETESIENGIVQLISELGIKKLVMGAAADRHHSKKMTELKSRKAIFVRREAPPPCQIWFTCKGYLIHTREAADDGESEYVASPRPSISANDLLQALSRPETGSVQRLGSNGSSTEHSERVSNGSLNTTDDEERDFDGSGVRGSATVMSTVDENSGRSSPSNFPDGVDDSFHDKIRQATSEAQSSKREAVAETVRRQKAEKNALDAIKRVKQSETAYSEELKRRKDTETAVAKEKERFNQIAEADTTMETLNKKLDIALQSERDRALREAEELRTLATETTSTLQHQLLPHYFTDFSFSEIEEATNRFDSTLKIGEGGYGSIYVGTLRHTQVAIKILNPKSSQGSVEYQQEVEVLSKTRHPNIITLIGACPEGWSLVYEYLPDGSLEDRLTCNNNSPPLSWQNRVRIATEICAALVFLHSNKAHSLVHGDLKPANILLDGNLVSKLSDFGTCSLGRSKSASTDLTGTVPYLDPEASSSGELTPKSDVYSFGVILLRLLTGRPALRIANEVKYALDSGSLNNLLDPSAGDWPFVQAEQLARLALRCCESVGGNRPDLGTEVWRVLEPMRASSGGSSSFHLGRNEQRIAPPYFICPIFQEVMQDPHVAADGFTYEAEAIRAWLDSGHDTSPMTNAKLSHNSLIPNHALRSAVQEWLQHHC
Length795
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.473
Instability index49.21
Isoelectric point6.13
Molecular weight87980.96
Publications
PubMed=25146293

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01153
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     137.68|      44|      50|     603|     652|       1
---------------------------------------------------------------------------
  534-  570 (29.98/10.64)	PPLswqnrvRIATEICAA.....L.VFLHSNKAHSlvhGDLKP..............
  603-  634 (45.21/24.19)	.....................GTV.PYLDPEASSS...GELTPKSDVYSFGVILLRL
  639-  682 (62.50/47.23)	PAL......RIANEVKYAldsGSLnNLLDP...SA...GDW.PFVQAEQLARLALRC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     173.05|      50|      50|     311|     360|       2
---------------------------------------------------------------------------
   22-   70 (67.68/44.91)	.I..............TTTSPGSRSSRSSATEEPVSRLIEEK..IFVAVDKHVAKSKSTLVWALQN
   75-  126 (29.99/15.60)	KIcvvhvhqpsqmipvMGAKFPVSSVKEEEV.KVFREKEREKvhMILDEYLRI.............
  311-  360 (75.39/50.91)	KI..............RQATSEAQSSKREAVAETVRRQKAEK..NALDAIKRVKQSETAYSEELKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.56|      15|     229|     467|     482|       3
---------------------------------------------------------------------------
  467-  482 (22.73/16.79)	TQVaIKILNP..KSSQGS
  695-  711 (23.82/12.84)	TEV.WRVLEPmrASSGGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.66|      16|      25|     365|     388|       6
---------------------------------------------------------------------------
  365-  382 (19.06/ 9.95)	ETAVAKEKERfnQIAEAD
  393-  408 (22.60/13.98)	DIALQSERDR..ALREAE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01153 with Med32 domain of Kingdom Viridiplantae
Unable to open file!