<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01152

Description BnaA07g10060D protein
SequenceMDQSQQRTVTAPSSSRSYQFHPARAKIIDLFNLYLGRGSRQKPDEPARDPPPNKSQKRVHAPSRDFPPGNEQFIVDFEQLHTQFNDPDQLRAITESVSVTMVLQCSNHAPRAEFLLFALRALFRIGFVNWDTFLPSLLSSVSAAESSLNQAASSSSATSSQSLAPVGIGSPGNEQASLTPLAVRSSQRVRAAAVNSLRQISCKIILIGVEFNLKPVTHAEIFQHMMSWLVSWDMREMGTEKSLSEWLRSCLEVIWLLVDEGQSRIPFYELLRSGLQFLENIPDGDEALFTLVMEIHRRRDAMAMHMLMLDQHLHCPTFGTHRISSQTPANVSAEAVAHLRYSPITYPSVLGEPLCGEDLAMSIPQGSLDWERAVRCIRHAIRTTPSPDWWKRVLVVSPGYRPSAQAGPIPGAVFTSDMICEAIIDRIVELLKLTNSGNVFFYANCWQEWLVFSDIFFFLIKSGCTDFVDFIDKLVLRLNGDDNHILRTNHVTWLLAQIIRVELVMTALNSDLKKVETTRKILSFHREDRTDPNNPQSVLLDFVSSCQNLRIWSLSATTRAYLNNDQLLKGKQIDEWWRSKGERMMDYMNLDDRSIGMFWVVSYTMAQPACETVINWLSSSGMAELPGLQPNERVMMMQEVTPLPMSLLSGFSMNLCLKLALQMEEALFVSQVVPSIAMVETYTRLLLISPHSMFRSHFTQLAQRNASLLSKPGVTLLVLEILNYRLLPLYRYQGKSKTLMYDVTKIISALKAKRGDHRIFRLAENLCMNLILSLRDFFSVKREGKGPTEFTETLNRITIMTLAITIKTRGIADADHLVYLQTMLEQILATSQHTWSEKTLRHFPSLLRDALSGRVDKRGLSIQAWQQAETTVINQCTQLLSPSAEPSYVMTYLSHSFPQHRQYLCAGACMLMQGHPDKVNSANLARVLREVSPEEVTANIYTLVDVLLHKVHVDLQRGHNIKEILDKHDANLAFFFWTHEMLPLDIFILALIDRDDDPHALIIAKIILERPELMQRINMYCANRGPPEHWLFTQVFKRNELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLVVYRLIENNAMDTADKILTAYSHFLAYHPLRFTFVRDILAYFYGHLPGQLVVKILRVLGLSKIPFSESFPQYISNPSSPTCPPLDYFATLLLNLVNNVIPPLSSSSSNCSSRSGSMADMLNSSSARSLHGKTPGASQPGPANASEGQKAFYQIQDPGTYTQLVLETAVIEILSLPVSAAQIVSSLVQIIVNIQSTLIQSGNGFHGAANGVGQGSVLPTSPSGGSTDSMSASRSTCMNTASFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHTQLYMEASRVVRETWWLTDGKRSQGELDSAVGYALMDPTWAAQDNTSTAIGNIVALLHAFFSNLPQEWLDGTHLIIKNLRPVTSVAMLRVVFRIMGPLLPRLANTHALFNKTLALLLTTMVDVFGKNSQTQVPVEASQIADLIDFLHHVVHYEGQGGAVQSSSKPRPDILALIGRAADSLRPDVQHLLSHLRTDPNTSIYAAAHQNAAKTNTS
Length1557
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.08
Grand average of hydropathy-0.051
Instability index45.00
Isoelectric point7.06
Molecular weight174261.47
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01152
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     347.48|      86|     548|     427|     512|       1
---------------------------------------------------------------------------
  427-  512 (149.87/87.27)	IVELLKLTNSGNVFFYANCWQEWLVFSDIFFF.LIKS..GCTDFVDFIDKLVL.......RLN......GD......DNHILRTNHVTWLLAQIIRVELVMTALNSDL
  961- 1049 (112.06/63.46)	IKEILDKHDANLAFFF...WTHEMLPLDIFILaLIDR..DDDPHALIIAKIILerpelmqRINmycanrGP......PE......H..WLFTQVFKRNELQKALGNHL
 1397- 1467 (85.54/46.76)	IVALLHA.......FFSNLPQEWL...DGTHL.IIKNlrPVTSVA..MLRVVF.......RIM......GPllprlaNTHALFNKTLALLLTTMVDV...........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.46|      25|     548|     933|     958|       2
---------------------------------------------------------------------------
  933-  958 (40.01/34.07)	PEEvTANIYTLVDVLLHKVHVDLQRG
 1477- 1501 (46.45/34.56)	PVE.ASQIADLIDFLHHVVHYEGQGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.51|      27|     102|      44|      72|       3
---------------------------------------------------------------------------
   44-   72 (48.37/41.00)	DEPARDPPPNKSQKrvHAPSRDFPPGNEQ
  149-  175 (46.14/31.83)	NQAASSSSATSSQS..LAPVGIGSPGNEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.34|      26|     548|     114|     139|       4
---------------------------------------------------------------------------
  114-  139 (46.17/32.09)	FLLFALRALFRIGFVNWDTFLPSLLS
  685-  710 (45.17/31.22)	LLLISPHSMFRSHFTQLAQRNASLLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     111.29|      24|     328|     223|     249|       6
---------------------------------------------------------------------------
  226-  249 (46.05/37.01)	MSWLVSWDMREMGTEK.SLSEWLRS
  253-  273 (22.79/10.24)	....VIWLLVDEGQSRiPFYELLRS
  597-  619 (42.44/23.75)	MFWVVSYTMAQPACE..TVINWLSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01152 with Med23 domain of Kingdom Viridiplantae
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