<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01150

Description BnaC05g32820D protein
SequenceMEGENVTELVNTAAPSTGEGIFATAPPPSGSVLATAASSVSPSSKSQPEQSSMSIAVSQSVSSFLTAQSSANPIPQAPHMLQNPPFGRPGTLAPPGLMTSPPAFPGSNPFSTIPRPGGPAQINPGIHPHMYPPYHSMPPMHGTPQGMWLQPRPMDGIPRAHFPSHPTPFPGNYPFPVRGASPHLPYPGSQPLPVGNAGTVHALPGHQPLDVPPGQKPEALSGIDDRAGSQLVGNRVDAWTAHKSETGVVYYYNSVTGQSTYEKPPGFEREPDKVPVQPIPISMENIHGTDWALVSTNDGKKYYYNNKTKVSSWQIPPEVKDLVKKMEERSTESLASVPSADLTEKGSEQSSLSAPAINNGGRDAVSLRTTIVPGFSALDLVKKKLHDSGVPVSSTTTSEANGGKSNEVTPSGESGDGMGKVKDAPGGGDLSDSTSDSEDEDSGPSKEECIKQFKEMLKERGVAPFSKWEKELPKIIFDPRFKAIQSHSVRRSLFEQYVKTRAEEERREKRAAHKAAVEGFKQLLDEASKDIDKHTDYHTFKKKWGNDLRFESLERKEREALLNERILSLKRAADQKAQEIRAAAASDFKTMLHEREVSINSHWSKVKDSLRNDPRYRSAAHEDREVFYNEYIAELKAARGDDYEMKSRGEEDKLRERERELRKRKEREVLEVERVRQKIRRKEAVASYQALLVEKIRDPEASWTESKPKLERDPQKRALNPDLDPADKEKLFRDHIKTLCERCARDFKALLVEVLSSEAASQQTEEAKTVLNSWSTAKQVLKSDIRYSKMPRDDREVIWRRYAEDILRKQKQDSPQKEEKPRDYKI
Length826
PositionUnknown
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.857
Instability index51.19
Isoelectric point8.05
Molecular weight91976.06
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01150
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     225.79|      25|      26|      85|     109|       1
---------------------------------------------------------------------------
   28-   52 (25.84/ 7.53)	PS.GSV.LATAA..SSVSPSS..K..SQPEQSS
   63-   85 (32.29/11.15)	SF.LTA.QSSAN..P..IPQA..P..HMLQNPP
   86-  109 (43.95/17.68)	.F.GRP.GTLAP..PGLMTSP..P..AFPGSNP
  115-  133 (24.43/ 6.74)	....RP.GGPAQinPGI..HP..H..MYP...P
  139-  166 (32.61/11.32)	PMhGTPqGMWLQ..PRPMDGI..PraHFP.SHP
  168-  191 (37.91/14.30)	PF...P.GNYPF..PVRGASPhlP...YPGSQP
  193-  208 (28.76/ 9.16)	PV.GNA.GTV.............H..ALPGHQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     191.50|      28|      63|     546|     573|       2
---------------------------------------------------------------------------
  478-  502 (21.48/ 8.57)	.DPR.......FKAI..QS.HSvRRSLFE...QYV....KTRA
  546-  573 (42.33/24.04)	NDLR.......FESL..ER.KE.REALLN...ERILSL.KRAA
  584-  609 (25.95/11.88)	AASD.......FKTM...L.HE.REVSIN...SHWSKV.KDS.
  612-  638 (39.79/22.15)	NDPR.......YRSA..AH.ED.REVFYN...EYIAEL.K.AA
  677-  714 (20.70/ 7.99)	QKIRrkeavasYQALlvEKiRD.PEASWT...ESKPKL.ERDP
  721-  744 (19.94/ 7.43)	............PDL..DP.AD.KEKLFR...DHIKTLcERCA
  783-  807 (21.31/ 8.44)	SDIR.......YSKM..PR.DD.REVIWRryaEDIL.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     201.62|      51|      51|     212|     262|       3
---------------------------------------------------------------------------
  212-  262 (89.36/51.46)	PPGQKPEALSGIDDRAGSQLVG......NRVDAWTAHKSETGVVYYYNSVTGQSTYE
  264-  314 (75.19/42.14)	PPGFEREP.....DKVPVQPIPismeniHGTD.WALVSTNDGKKYYYNNKTKVSSWQ
  316-  348 (37.07/17.05)	PPEVK.DLVKKMEERSTESLAS......VPSADLTEKGSE.................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.37|      14|      15|     403|     416|       4
---------------------------------------------------------------------------
  403-  416 (24.91/11.11)	GKSNEVTPSGESGD
  419-  432 (24.46/10.79)	GKVKDAPGGGDLSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.33|      14|      15|     644|     657|       7
---------------------------------------------------------------------------
  644-  657 (24.04/13.03)	EMKSRGEEDKLR.ER
  660-  674 (18.28/ 8.34)	ELRKRKEREVLEvER
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01150 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FLTAQSSANPIPQAPHMLQNPPFGRPGTLAPPGLMTSPPAFPGSNPFSTIPRPGGPAQINPGIHPHMYPPYHSMPPMHGTPQGMWLQPRPMDGIPRAHFPSHPTPFPGNYPFPVRGASPHLPYPGSQPLPVGNAGTVHALPGHQPLDVPPGQKPEALSGIDDRAGSQLVGNRVDA
2) HDSGVPVSSTTTSEANGGKSNEVTPSGESGDGMGKVKDAPGGGDLSDSTSDSEDEDSGPSKEECIKQF
3) IPPEVKDLVKKMEERSTESLASVPSADLTEKGSEQSSLSAPAINNGGRDAVS
4) MEGENVTELVNTAAPSTGEGIFATAPPPSGSVLATAASSVSPSSKSQPEQSSMSIAVSQSVS
64
386
315
1
238
453
366
62










Molecular Recognition Features






MoRF SequenceStartStop




1) DILRKQKQDS
2) GKKYYY
3) KEEKPRD
4) VIWRRYA
805
299
817
797
814
304
823
803