<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01149

Description BnaA05g19330D protein
SequenceMEGENVTEPLNTAAPSTGESIFATAPPPSDSVLATAASSISPSSKSQPEQSSMSIATTAQLSANAAASSIANPIPQASHMLQNPPFGRPGTLAPPGLMTSPPAFPGSNPFSTIPRPGGPAQINPGVHPHMYPPYHSLPPMHGTPQGMWLQPPPMGGIPRAHFPSHPTPFPGNYPFPVRGASSHLPYPGSQPLPVGNAGTVHALPGHQPLDVPPGQKPETLSGIDDRAGSQLVGNRVDAWTAHKSETGVVYYYNSVTGQSTYEKPPGFEREPDKVPVQPIPISMENIHGTDWALVSTNDGKKYYYNNKTKVSSWQIPPEVKDLVKKTEERSTESLASVPSADLTEKGSEQSSLSAPAINNGGRDAVSLRTTIVPGFSALDLVKKKLHDSGVPVSSTTTSEANGGKANEVTPSGESGDGMGKVKDAPGGGDLSDSTSDSEDEDSGPSKEECIKQFKEMLKERGVAPFSKWEKELPKIIFDPRFKAIQSHSVRRSLFEQYVKTRAEEERREKRAAHKAAVEGFKQLLDEASKDIDKHTDYHTFKKKWGNDLRFESLERKEREALLNERILSLKRAADQKAQEIRAAAASDFKTMLHEREVSINSHWSKVKDSLRNDPRYRSAAHEDREVFYNEYIAELKAARGDEYEMKSRGEEDKLRERERELRKRKEREVLEVERVRQKIRRKEAVASYQALLVEKIRDPEASWTESKPKLERDPQKRALNPDLDPADKEKLFRDHIKTLYERCARDFKALLVEVLSSEAASQQTEEAKTVLNSWSTAKQVLKSDIRYSKMPRDDREVIWRRYAEDILRKQKQDSPQKEDKPRDYKI
Length826
PositionUnknown
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.862
Instability index49.54
Isoelectric point7.73
Molecular weight91828.73
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01149
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     191.22|      26|      26|      85|     110|       1
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   85-  110 (55.34/22.89)	PF.GRP.GT.L.AP..P..GLMTSP.PA.FPGSNPF
  114-  134 (37.77/13.52)	P...RP.GG.P.AQinP..GV..HP.HM.YP...PY
  139-  166 (26.42/ 7.46)	PMhGTPqGMwL.QP..P..PMGGIP.RAhFP.SHP.
  168-  192 (41.70/15.62)	PF...P.GN.Y.PF..PvrGASSHL.P..YPGSQPL
  193-  217 (29.98/ 9.36)	PV.GNA.GT.VhAL..P..G..HQPlDV.PPGQKP.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     341.58|      57|      57|     690|     746|       2
---------------------------------------------------------------------------
  451-  506 (68.93/35.59)	KQ.............fkEMLKERGV..APFSK....WEKELPKIIF.DPRFKAIQSH...SVRRSLF....EQYVK.....TRAEEER
  507-  573 (57.48/28.52)	RE..kraahkaavegfkQLLDEASKdiDKHTD....YHTFKKKWGN.DLRFES....LERKEREALL....NERIL.....SL.KRAA
  574-  638 (49.82/23.79)	.DqkaqeiraaaasdfkTMLHER......EVSinshWSKVKDSLRN.DPRYRSAAHE....DREVFY....NEYIA.....EL..KAA
  639-  689 (29.56/11.29)	RG...........deyeM....KSR..GEEDK....LRER....ER.ELRKR........KEREVLEvervRQKIRrkeavASYQ...
  692-  744 (83.10/44.33)	...................LVEKIR..DPEAS....WTESKPKLER.DPQKRALNPDLDPADKEKLF....RDHIK.....TLYERCA
  745-  803 (52.69/25.56)	RD.............fkALLVEVLS..SEAAS..qqTEEAKTVLNSwSTAKQVLKSDIRYS...KMP....RDDRE.....VIWRRYA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.30|      27|      51|     239|     265|       3
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  239-  265 (51.89/32.76)	WTAHKSETGVVYYYNSVTGQSTYEKPP
  291-  317 (52.41/33.16)	WALVSTNDGKKYYYNNKTKVSSWQIPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.88|      14|      15|     403|     416|       4
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  403-  416 (24.26/14.68)	GKANEVTPSGESGD
  419-  432 (24.61/15.02)	GKVKDAPGGGDLSD
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.10|      23|      55|     321|     346|       5
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  321-  346 (32.76/23.17)	DLVKKteeRSTESLASVPSADLTE.KG
  379-  402 (35.33/17.93)	DLVKK...KLHDSGVPVSSTTTSEaNG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      91.30|      20|      45|      12|      31|       6
---------------------------------------------------------------------------
   12-   31 (35.08/20.46)	TAAPSTGESIFATAPP.PSDS
   35-   53 (30.11/16.37)	TAASSISPS.SKSQPE.QSSM
   58-   78 (26.10/13.08)	TAQLSANAAASSIANPiPQAS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01149 with Med35 domain of Kingdom Viridiplantae
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