Description | BnaA05g19330D protein |
Sequence | MEGENVTEPLNTAAPSTGESIFATAPPPSDSVLATAASSISPSSKSQPEQSSMSIATTAQLSANAAASSIANPIPQASHMLQNPPFGRPGTLAPPGLMTSPPAFPGSNPFSTIPRPGGPAQINPGVHPHMYPPYHSLPPMHGTPQGMWLQPPPMGGIPRAHFPSHPTPFPGNYPFPVRGASSHLPYPGSQPLPVGNAGTVHALPGHQPLDVPPGQKPETLSGIDDRAGSQLVGNRVDAWTAHKSETGVVYYYNSVTGQSTYEKPPGFEREPDKVPVQPIPISMENIHGTDWALVSTNDGKKYYYNNKTKVSSWQIPPEVKDLVKKTEERSTESLASVPSADLTEKGSEQSSLSAPAINNGGRDAVSLRTTIVPGFSALDLVKKKLHDSGVPVSSTTTSEANGGKANEVTPSGESGDGMGKVKDAPGGGDLSDSTSDSEDEDSGPSKEECIKQFKEMLKERGVAPFSKWEKELPKIIFDPRFKAIQSHSVRRSLFEQYVKTRAEEERREKRAAHKAAVEGFKQLLDEASKDIDKHTDYHTFKKKWGNDLRFESLERKEREALLNERILSLKRAADQKAQEIRAAAASDFKTMLHEREVSINSHWSKVKDSLRNDPRYRSAAHEDREVFYNEYIAELKAARGDEYEMKSRGEEDKLRERERELRKRKEREVLEVERVRQKIRRKEAVASYQALLVEKIRDPEASWTESKPKLERDPQKRALNPDLDPADKEKLFRDHIKTLYERCARDFKALLVEVLSSEAASQQTEEAKTVLNSWSTAKQVLKSDIRYSKMPRDDREVIWRRYAEDILRKQKQDSPQKEDKPRDYKI |
Length | 826 |
Position | Unknown |
Organism | Brassica napus (Rape) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica. |
Aromaticity | 0.06 |
Grand average of hydropathy | -0.862 |
Instability index | 49.54 |
Isoelectric point | 7.73 |
Molecular weight | 91828.73 |
Publications | PubMed=25146293 |
Annotated function |
|
GO - Cellular Component | nucleus GO:0005634 IBA:GO_Central |
GO - Biological Function | RNA polymerase binding GO:0070063 IBA:GO_Central transcription coregulator activity GO:0003712 IBA:GO_Central |
GO - Biological Process |
Binary Interactions |
Repeats | >MDP01149 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 5| 191.22| 26| 26| 85| 110| 1 --------------------------------------------------------------------------- 85- 110 (55.34/22.89) PF.GRP.GT.L.AP..P..GLMTSP.PA.FPGSNPF 114- 134 (37.77/13.52) P...RP.GG.P.AQinP..GV..HP.HM.YP...PY 139- 166 (26.42/ 7.46) PMhGTPqGMwL.QP..P..PMGGIP.RAhFP.SHP. 168- 192 (41.70/15.62) PF...P.GN.Y.PF..PvrGASSHL.P..YPGSQPL 193- 217 (29.98/ 9.36) PV.GNA.GT.VhAL..P..G..HQPlDV.PPGQKP. --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 6| 341.58| 57| 57| 690| 746| 2 --------------------------------------------------------------------------- 451- 506 (68.93/35.59) KQ.............fkEMLKERGV..APFSK....WEKELPKIIF.DPRFKAIQSH...SVRRSLF....EQYVK.....TRAEEER 507- 573 (57.48/28.52) RE..kraahkaavegfkQLLDEASKdiDKHTD....YHTFKKKWGN.DLRFES....LERKEREALL....NERIL.....SL.KRAA 574- 638 (49.82/23.79) .DqkaqeiraaaasdfkTMLHER......EVSinshWSKVKDSLRN.DPRYRSAAHE....DREVFY....NEYIA.....EL..KAA 639- 689 (29.56/11.29) RG...........deyeM....KSR..GEEDK....LRER....ER.ELRKR........KEREVLEvervRQKIRrkeavASYQ... 692- 744 (83.10/44.33) ...................LVEKIR..DPEAS....WTESKPKLER.DPQKRALNPDLDPADKEKLF....RDHIK.....TLYERCA 745- 803 (52.69/25.56) RD.............fkALLVEVLS..SEAAS..qqTEEAKTVLNSwSTAKQVLKSDIRYS...KMP....RDDRE.....VIWRRYA --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 104.30| 27| 51| 239| 265| 3 --------------------------------------------------------------------------- 239- 265 (51.89/32.76) WTAHKSETGVVYYYNSVTGQSTYEKPP 291- 317 (52.41/33.16) WALVSTNDGKKYYYNNKTKVSSWQIPP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 48.88| 14| 15| 403| 416| 4 --------------------------------------------------------------------------- 403- 416 (24.26/14.68) GKANEVTPSGESGD 419- 432 (24.61/15.02) GKVKDAPGGGDLSD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 68.10| 23| 55| 321| 346| 5 --------------------------------------------------------------------------- 321- 346 (32.76/23.17) DLVKKteeRSTESLASVPSADLTE.KG 379- 402 (35.33/17.93) DLVKK...KLHDSGVPVSSTTTSEaNG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 91.30| 20| 45| 12| 31| 6 --------------------------------------------------------------------------- 12- 31 (35.08/20.46) TAAPSTGESIFATAPP.PSDS 35- 53 (30.11/16.37) TAASSISPS.SKSQPE.QSSM 58- 78 (26.10/13.08) TAQLSANAAASSIANPiPQAS --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) GKKYYYN 2) PKIIF 3) QKEDKPRDY 4) VIWRRYAEDILRKQKQDS | 299 473 816 797 | 305 477 824 814 |
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