<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01148

Description BnaA06g11820D protein
SequenceMAARRVKGKDSNAVTAIAIDKDKNSQHALKWAVENIVVNSPNCILLHVQTKLRIGAEENTEADNEEEAHQFFLPFRGFCARKGIMAKEVLLHDIDIASAIVDYINNNSIANIVLGATARNSFLKKFKTVDVPGTLLKTTPDTCAVFVVSKGKLLTSKSASRPQTPQHSPQPPKPHPHSAISDPGPASSITFSDSGRSSPALNGGFSPPTAHFTPSLIRSSPSRFSNGLSPSGHSGESNVSFYSILGRSTYGGSSHSSTSMSELADGEERFSGGSYITEQNHNLEAEVRRLRLELQQYNVSMGRESAPHLQGPSAAAESIKLEEAKVARDMLRAMSEMDKHKTQSEIHATELAHRLAEMDKQKRRLVEMQARFTEQDMASNVSYRRYSIRDVEGATDGFSDAQKIGEGGYGPVYKAVLENTSVAIKILKSDVSQGLKQFQQEVEVLSCMRHPNMVILLGACPEYGCLVYEYMENGTLEDRLFCKDNTPPLSWRQRFRIAAEIATGLLFLHQAKPEPLVHRDLKPANILLDRHLNSKISDVGLARLVPPAVADSFTNYHMTAAAGTFCYIDPEYQQTGMLGVKSDLYSFGVVLLQILTAMPAMGLSHRVEKALERKRLIEVLDPKVSDWPEEETQVLAQLALQCCELRKRDRPDLATVLLPALSKLREFATEDHEDDRIYSVPRAHNSVHDVDDDDRIFSVPRAHNSVPRSPISSSSQVGFLEPVITELYFHFNHFICNVNSGCIEKFLLIPYLPEEGDKTMRRKILLVF
Length768
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.342
Instability index49.15
Isoelectric point6.47
Molecular weight85220.81
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01148
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.56|      15|      18|     673|     687|       1
---------------------------------------------------------------------------
  673-  687 (31.75/19.90)	EDDRIYSVPRAHNSV
  692-  706 (31.81/19.95)	DDDRIFSVPRAHNSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.42|      19|      20|     187|     206|       2
---------------------------------------------------------------------------
  188-  206 (34.73/20.61)	SITFSDS.GRSSPA.LNGGFS
  209-  229 (26.70/ 9.98)	TAHFTPSlIRSSPSrFSNGLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.71|      18|      22|     232|     252|       4
---------------------------------------------------------------------------
  234-  252 (27.63/27.95)	SGESNVSFySIL..GRSTYGG
  253-  272 (27.08/12.42)	SSHSSTSM.SELadGEERFSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.79|      18|      22|     626|     647|       5
---------------------------------------------------------------------------
  626-  647 (25.88/31.91)	DWPEEETQVLAQLAlqccELRK
  649-  666 (29.91/21.09)	DRPDLATVLLPALS....KLRE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.68|      14|      24|     480|     493|       6
---------------------------------------------------------------------------
  480-  493 (29.29/17.14)	LFCKDNTP.PLSWRQ
  506-  520 (22.39/11.50)	LFLHQAKPePLVHRD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01148 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GGSSHSSTSMSELADGEERFSGGSYITEQNHN
2) SKSASRPQTPQHSPQPPKPHPHSAISDPGPASSITFSDSGRSSPALNGGFSPPTAHFTPSLIRSSPSRFSNGLSPSG
251
156
282
232










Molecular Recognition Features






MoRF SequenceStartStop




NANANA