<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01146

Description BnaC05g33110D protein
SequenceMANNPHYPGIQPFQHPNASSINLPRGFAPSMNFQHRPPIQAPQSEQVAHLASQNFQYVGRGGTMMNNGFPPQSYAPQLLQSMHNSLERPSQSNQVQHVPLGHPSLISQPNVSVASGTFLPEPYVQTSVVNMNGGPRALFSHQSATSFGHLRAPTQVTGPSSHSQAQQSAPISQDNAPSSITNPTFVHPKVASSQPIPFKEAATDWVEHTSADGRRYFFNKKTKQSTWEKPVELMTLFERADAKTDWKEHSSPDGRKYYYNKVTKQSTWTMPEEMKIAREQAENASVQGLHAEGVVDASKVLSLSDTASTAAPAGLPSQTSSTFPTSDTSEKLALTSDWEQAASVPGSSSPVENVDQVQAIADKTSELCDTAKTDNPSATVMITSAATLVDKETVSTDNNGNADDVSAKNTNQGSGTGPEESQKHVVENERVDSQSEGKQIHQENFSYTNKSEAVDVFKSLLKSVNVGSDWTWEQAMREIINDRRYGVLRTLGERKQAFNEFLAQMRKAAEEEKIARQLKRYEDFRRMLEECVELTPSTRWSKAVTMLEDDERFKVVEREKDRRNIFEDHISDLKEKERVKAFEDRKRNIVEYRRFLESCNFIKPNSQWRKVQDRLEVDERCSRLEKIDQLEIFQEYLRDLEREEEERKKIQKEELKKAERKHRDEFRGLIDEHIATGELTAKTSWRDYLVKVKDLPVYLAIASNSSGATPKELFEDAVEDLKRKYHELKSQIKDVLKLRKVTLSTGSTFDEFRVSVSEGIGSPSIPDFKLKLVFDDLLERAKEKEEKEARKQTRNTEKLVDMLRSFKYITASSSWEDSKHLVEGTEKFRTIGDESFRKKTFEDYISHLKEQAKRIKQNKKEHVREEHDREKDKYGREKERVRERDNRDHRKQGSADNYNHDVDELYGKERRRSGRDSHSRHRERHTSVKENEADHYKESLKAGRGHKESRQQRGLVREAEDEGREKRRRKGGESEQTKRAEKEEELEDGECGRY
Length994
PositionUnknown
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-1.062
Instability index47.85
Isoelectric point6.72
Molecular weight113940.01
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01146
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     499.51|      65|      65|     523|     587|       1
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  427-  507 (55.95/25.36)	EN.ERVDSQSE.....GKQ..ihqenfsytnkseavD.VFKSLLKSV...NVGSD.........WTWEQA..MREiiND..RRYGVLRTLG...ER...KQAFNEFLAQMrK
  508-  574 (93.77/47.12)	AA.EEEKIARQ.....LKR...............yeD.FRRMLEECV...ELTPS.........TRWSKAVTMLE..DD..ERFKVVEREK...DR...RNIFEDHISDL.K
  575-  641 (84.06/41.53)	EK.ERVKAFED.....RKR..............nivE.YRRFLESCN...FIKPN.........SQWRKVQDRLE..VD..ERCSRLEK.I...DQ...LEIFQEYLRDL.E
  651-  722 (64.58/30.32)	QK.EELKKAER.....KHR.................DeFRGLIDEHIatgELTAK.........TSWRDYLVKVK..DL..PVYLAIASNSsgaTP...KELFEDAVEDL.K
  723-  801 (39.67/15.99)	RK...YHELKS.....QIKdvlklrkvtlstgstfdE.FRVSVSEGI...G.SPS.........IPDFK.LKLVF..DDllERAKEKEEKE...ARkqtRNT..EKLVD...
  802-  849 (54.33/24.43)	.........................................MLRSFK...YITAS.........SSWEDSKHLVE..GT..EKFRTIGDES...FR...KKTFEDYISHL.K
  850-  906 (58.48/26.81)	EQaKRIK..QN.....KKE.................H.VRE..EHDR...EKDKY.........GREKERVR..E..RD..NR...DHRKQ...GS...ADNYNHDVDEL.Y
  907-  980 (48.66/21.17)	GK.ERRRSGRDshsrhRER...............htS.VKE..NEAD...HYKESlkagrghkeSRQQRGLVREA..ED..E.....GREK...RR...RKGGESEQTKR.A
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.71|      36|      39|     198|     233|       2
---------------------------------------------------------------------------
  198-  233 (72.13/49.03)	FK..EAATDWVEHTSADGRRYFFNKKTKQSTWEKPVEL
  237-  274 (70.58/47.80)	FEraDAKTDWKEHSSPDGRKYYYNKVTKQSTWTMPEEM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     175.81|      40|      84|       1|      40|       3
---------------------------------------------------------------------------
    1-   38 (69.32/34.74)	.........................MANNPHY.................................PGIQPFQHPNASSINLPRGFAPSM....NFQHRPP
   39-   97 (44.18/19.88)	IQapqseqvahlasqnfqyvgrggtMMNNGFP.................................PQSYAPQLLQSMHNSLERP.SQSN....QVQH...
   99-  123 (33.62/13.63)	.....................................................................PLGHP..SLISQPNVSVASG....TFLPEPY
  124-  189 (28.69/10.71)	VQ..............................tsvvnmnggpralfshqsatsfghlraptqvtgPSSHS.QAQQSAPISQDN..APSSitnpTFVH.PK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.01|      27|      27|     316|     342|       4
---------------------------------------------------------------------------
  284-  310 (36.46/27.47)	A..SVQGLHAEGVVDASKVLS.LSDTASTA
  313-  341 (40.57/31.59)	AglPSQTSSTFPTSDTSEKLA.LTSDWEQA
  342-  370 (29.99/20.98)	AsvPG.SSSPVENVDQVQAIAdKTSELCDT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01146 with Med35 domain of Kingdom Viridiplantae
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