<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01145

Description BnaCnng04590D protein
SequenceMSSEMKQLIVVAEGTAALGPYWQTIVSDYLHKIIRSFCGSELNGDRNPVSSVELSLVIFNSHGSYCGCLVQRSGWTRDVDIFLHWLSSIQFAGGGFSEAATAEGLAEALMMFPPPPGQAQPSNDLKRHCILITASNPYSLPTPIYRPKLQNAERNENGDALPESRLSDAETVASYFSRCSVSLSVVCPKQLPKIRALYNAGKLNPQSPDLSIDTVKNTFYLVLISENFVEARAALSHSATNVPQTQSPVKMDRATVPPSLPVTGPPPASLPSVSANGPILNRQPVSVGPVPTATVKVEPCTVSSMAAVPTFPHIPSSVARPAAQAIPSVQTSSASSVSQEMVANAENAPDVKPVVSGMTPPLRTGPPGNVNLLNNLSQPPSQTAFSSGQQGNTSMAGSGGLMGNAQAGQSPGPNNSFSPQTTSNVTSNLGVSQPMPGMNQGSHSGAQMMQGGISMNQNMMTSLGQGNVSSGTGGMMPTPGVGQQAQSGVQQLGGSNSSAPNMQLSQASSGALQPSQSKYVKVWEGNLSGQRQGQPVLITRLEGYRNATASDSLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQDKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQITNQQQQQQQQHQQQQQQQQQQQIHQQQQQQQIQQQQQHQQLPQLQQQQHQLSQLQHHQQQQQQQHQLSQLQQHHQQQQTSPLNQMPQQTSPLNQMPQQQPQQMVGSGLMGGQAFAQGPGRSQQGGGGQPNMPGAGFMG
Length779
PositionUnknown
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.04
Grand average of hydropathy-0.475
Instability index59.26
Isoelectric point8.77
Molecular weight83475.94
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01145
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      83.92|      15|      15|     686|     700|       1
---------------------------------------------------------------------------
  643-  657 (29.21/ 7.91)	NQ....QQQQQQQHQQQ.QQ
  680-  698 (28.95/ 7.78)	QQlpqlQQQQHQLSQLQ.HH
  699-  715 (25.75/ 6.14)	QQ...qQQQQHQLSQLQqHH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     216.47|      40|      40|     424|     463|       2
---------------------------------------------------------------------------
  369-  391 (31.57/ 6.35)	....NVNLLNNL...........SQP..PS......QTAFSSGQ..QG
  424-  451 (44.05/11.87)	...............NVTSNLGVSQP.MPG....MNQGSHSGAQMMQG
  452-  494 (62.78/20.16)	GISMNQNMMTSLgqgNVSSGTGGMMP.TPG....VGQQAQSGVQQLGG
  495-  533 (45.05/12.31)	SNSSAPNM..QL...SQASS.GALQP.SQSkyvkVWEGNLSGQR..QG
  748-  776 (33.03/ 6.99)	GLMGGQAFAQGP...GRSQQGGGGQPnMPG....AG............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     188.06|      40|      40|     176|     215|       3
---------------------------------------------------------------------------
  128-  172 (41.01/18.88)	..HCilitaSNPYSLPTPI..YRPKLQnAERNeNGDAL.P..ESRLSDAE..TV
  176-  215 (71.13/38.12)	FSRC.....SVSLSVVCPK..QLPKIR.ALYN.AGKLN.P..QSPDLSID..TV
  219-  256 (37.14/16.40)	FYLV.....LISENFV........EAR.AALS.HSATNvPqtQSP.VKMDraTV
  259-  290 (38.78/17.45)	...........SLPVTGPPpaSLPSVS.A..N.GPILN.R..Q.P.VSVG..PV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.57|      11|      51|     297|     309|       5
---------------------------------------------------------------------------
  297-  309 (11.26/12.25)	VEPcTVSSMAAvP
  351-  361 (20.31/ 9.18)	VKP.VVSGMTP.P
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01145 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ATNVPQTQSPVKMDRATVPPSLPVTGPPPASLPSVSANGPILNRQPVSVG
2) QQQQQQQHQQQQQQQQQQQIHQQQQQQQIQQQQQHQQLPQLQQQQHQLSQLQHHQQQQQQQHQLSQLQQHHQQQQTSPLNQMPQQTSPLNQMPQQQPQQMVGSGLMGGQAFAQGPGRSQQGGGGQPNMPGAGFMG
3) SSVARPAAQAIPSVQTSSASSVSQEMVANAENAPDVKPVVSGMTPPLRTGPPGNVNLLNNLSQPPSQTAFSSGQQGNTSMAGSGGLMGNAQAGQSPGPNNSFSPQTTSNVTSNLGVSQPMPGMNQGSHSGAQMMQGGISMNQNMMTSLGQGNVSSGTGGMMPTPGVGQQAQSGVQQLGGSNSSAPNMQLSQASSGA
239
645
316
288
779
511










Molecular Recognition Features






MoRF SequenceStartStop




NANANA