<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01143
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MWTNVFRIGGLHHVSWFQFLPSEAELNPTSDTSSRAEQNDVATYLVLSSHLRLQKEGFLSTWTNSFVGPWDPSQGLYNPDEKIKLWLFLPGRHSSITDKAQAAVSKLRVVASGIWVAPGDSEEISVAFSQSLRNCIERALSGLSYMRFGDVFSKVSPQNEEYLRRGRLTVEFVFAATEEAVFVHVIVSAKNVRTLSSGDAERLSRSSLKNSSYRLPVIVSPHGMRGSLTGFCPNDLVKQVYFSSGNLRSSSGYIGLPPHAGSGSRLINGDHCYVEVTLGCCQNINDNTSQTNSTFAVNVPQTSVGSKDHRKGHPDIASMCEKKFIYPAEAVLVPILQSAFAKFSLKRFWLQNWIGPSLAGSSLFMHWAGDFDFFGSSGNKSDGFFEKNGYNSSGSSGNSSISSTSSASSGSGWRMTSRTGDLDADADSLTCNDDHPKLGSKRPRTGMAESFGQVGTANDQFGWDWDDDDDDDRGVGMDIQALLSEFGDFGDFFENDALPFGEPPGTAESHSLILPSDSADVGSSPMDTMDVSDQIVLPVGFSSFESFNPAPPIIDEGLIKSQEVLNNSVTSVSAPSNQMLSSSNSEFDHLMKAEAMMTFAPEYGAVEAPMSEISSTSFKSPYLPKSHKVESSNSRTSSYVYGPTPPATDSDGAVDKILLGSKAYIGNDGRTLYTKVEGRKGRYDKLPTLISDNNSKKEGVSQLKYSNYNASSAVKIVQGKKTDGISAVVSTLLSSKTLLATDVGSVMFQAFMYRMRHKAISSKHSSPVSLSRLSGNFFLNQVPNEPSSLTDNVSGRNEIYKKEVPTRIAGDFDGGMLDSHMSAPVGVWRTVSVPKTAKPASSPNIEAGSSLPHSSFSENSLLSYGQRQPLQELLDGIALLVQQATSFVDLALDSDCGDGPYGWLALEELWRRELSCGPSAGHAGCGGTLASCHSLDIAGVKLVDPLSAEVFPSSVITLLQSDIKTALKSAFGQSDGPLYVTDWCKGRNQSMDGVSISEGSTAESVLSEVSNAIDGGKGEESAQSQDIYSSELLRPTLFVLPSPSILVGYQDDWLKVSTNSLPHWEKAPFEPYALPKNMNYTVVCPDIDPLTSAAVDFFQQLGTVYETCRLGTHLPQILGNQMETDAGRLSSSGFVLLDCPQSMKIESNNTSLLGSLSDYFLSLSNGWNVNSYLKSLSKALKGLKLGSGLYTNQKEGSATPCMVVYIVCPFPDPSAVLRTVVESSIALGSGIKPDRDRRSLLNSQVARAFGSSAAVDEASISHIPVLSGFSVPKLVLQVVSVDSIFRITSPSFNELVILKDTAFSVYNKARRISRGMPNDAFLSSSLSNRSSSALASVNSISGIWKDCVSSRMTGSTHPRDGDIDGSIRTSSWDSSWQITRSGGVSCDSNRNGDFYINEEIFYLFEPLFILSEPGSVDRGVSPTFGGLGSESSKPIPEDGGRGSGLGVNSMEGTSSQGDASQVEGKAVPSLHCCYGWTEDWRWLVSIWTDARGELLDTHIFPFGGISSRQDTKGLQCLFVQVLQQGCQILQACSSPDSGSFKPRDFVITRIGSFFELEYLEWQKAIYTAGGPEIKKWPIQLRRSAPSGVATNSNGPSLQQHDLSLIQERASSTSTLYGSHSKPSTFVKGGMGHSAGRKQTMGGQTISGTPRGLFQWVHSISFASISLDHSLHFVLPAELVSPGGGQSSTGMSAANYIEGFTPVKSLGSTAFSYMMIPSPNMRFLHPSPLQLPTCLTAESPPLAHLLHSKGCAIPLSTGFVVSKAVPSMRKDSRINVKEEWPSVLSVSLIDYYGGYDNAHDKVLQGIMKQGGGGTKETRDFEVESHLILESIAAELHALSWMTVSPAYLDRRTALPSHCDVVLRLSRLLHFADKERSRLPDKSGV |
Length | 1883 |
Position | Kinase |
Organism | Brassica napus (Rape) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae>
rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.236 |
Instability index | 45.98 |
Isoelectric point | 5.69 |
Molecular weight | 203354.67 |
Publications | PubMed=25146293
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IBA:GO_Central
|
GO - Biological Function | transcription coregulator activity GO:0003712 IBA:GO_Central
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IBA:GO_Central
|
Interaction
Repeat regions
Repeats |
>MDP01143
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 390.63| 120| 149| 157| 305| 1
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164- 293 (192.96/132.76) RRGRLTV......EFVFAAteEAVFVHVIVSAKNVRTLSSGDAERLSRSSLKNSSYRLPVI..VSPHGMRGSLT.GFcpndLVKQVYFSSGNLRSSSGYIGLPPHAGSGSRLIN..GDHCYVEVTLGCcqniNDNTSQTNS
310- 440 (197.67/88.24) RKGHPDIasmcekKFIYPA..EAVLVPILQSAFAKFSLKRFWLQNWIGPSLAGSSLFMHWAgdFDFFGSSGNKSdGF....FEKNGYNSSGSSGNSSISSTSSASSGSGWRMTSrtGDLDADADSLTC....NDDHPKLGS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 421.07| 127| 149| 1343| 1475| 2
---------------------------------------------------------------------------
1343- 1475 (209.97/114.54) IWKDCVSSRMTGSTHPRdGDIDGSIRTSSWDSSW.QITRSGG...VSCDSNRNGDFYINEEIFYLFEPLFILsEPGSVDRGVSpTFGglGSESSK.PIPEDGGRGSGLGVNSMEGTSSQGDASQVEGKAvPSLHCCYG
1486- 1617 (211.09/98.16) IWTDARGELLDTHIFPF.GGISSRQDTKGLQCLFvQVLQQGCqilQACSSPDSGSFKPRDFVITRIGSFFEL.EYLEWQKAIY.TAG..GPEIKKwPIQLRRSAPSGVATNSNGPSLQQHDLSLIQERA.SSTSTLYG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 117.58| 35| 149| 668| 744| 3
---------------------------------------------------------------------------
632- 666 (61.73/78.91) SNSRTSSYVYGPTPPATDSDGAVDKILLGSKAYIG
706- 740 (55.85/22.10) SNYNASSAVKIVQGKKTDGISAVVSTLLSSKTLLA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 52.97| 15| 74| 886| 900| 4
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886- 900 (29.75/17.93) SFVDLALDSDCG..DGP
961- 977 (23.22/12.17) SDIKTALKSAFGqsDGP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 113.53| 35| 439| 807| 857| 6
---------------------------------------------------------------------------
822- 857 (56.46/31.19) SAPVGVWRTVSVPKTAKpASSPNIEAGSSLPHSSFS
1270- 1304 (57.08/45.69) SVPKLVLQVVSVDSIFR.ITSPSFNELVILKDTAFS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 80.37| 25| 198| 791| 815| 8
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791- 815 (42.72/28.07) DNVSGRNEIYKKEVPTRIAGDFDGG
992- 1016 (37.65/23.70) DGVSISEGSTAESVLSEVSNAIDGG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 64.22| 20| 23| 496| 515| 10
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496- 515 (37.16/19.20) DALPFGEPP.GTAE.SHSLILP
517- 538 (27.06/11.90) DSADVGSSPmDTMDvSDQIVLP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 75.37| 19| 122| 1070| 1089| 11
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1070- 1089 (35.13/29.70) EPYALPKNMNYtVVCPDIDP
1195- 1213 (40.23/28.79) EGSATPCMVVY.IVCPFPDP
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