<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01142

Description BnaC07g31290D protein
SequenceMREGALIVAVAIKGNNSKTKGVIRWALQEFASQEHVVFKLLHVQPRDSMSVSTSRKGSTTTVYKKDVDRKTREMLHPSSSMFAHREVQLDMMVLESDDVADAISKAVQDHGISELVIGASSSSVIFSWKLKRSNLSSRIADVTPRFCTVHVISKGKLVNVRKSDVDIETSIADDRSESQFSSSSQSGSVSSTSSHQFSSTSLLYQRVQALSTVNQKVGTNMGTTKSIDTHHSRAASLDVDEPNQRGYYRTNSSLIRYKESDIHSRRSSLTEEGSSSGCYSDPTSCSSQMNKDFELEKLKIELRHIKGMYAVAQSEVLDATKKMQDLNQRRSEEATRLKNLTIREEYAEEAVEMERERQEEAENEAELVRESVERETEERLEAEARAEEVRKEKQRLEDALEGGPLQRQQYMKFEWEDIVQATSSFSDELKIGTGGYGSVYRCNLHHATVAVKVLHSDKSSLTKQFHQELEILSKIRHPHLLLLLGACPERGSLVYEYMHNGNLEERLMKRRPNTDAPQQPLLWFERFRIAWEIASALYFLHTNEPRPIVHRDLKPANILLDQNNVSKIGDVGLSKMVNLDPSHASTVFNETGPVGTFFYIDPEYQRTGVVTPESDIYAFGIILLQLATARSAMGLAHSVEKALRDQTGNFSEILDETAGDWPVKEAKEMVMIGLRCAEMRKRDRPYLGKEILPVLERLKDVASDARNMFSETVSTHHNHAPSHFHCPITKDVMENPCVASDGYTYEKRAIKECLEKNHKSPMTDSPFPNQTLLPNHSLLFAIKEWRSSHAIT
Length792
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.565
Instability index46.64
Isoelectric point6.29
Molecular weight89522.86
Publications
PubMed=25146293

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01142
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.18|      39|      95|      43|      82|       2
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   43-   82 (63.34/44.74)	VQPRdSMSVSTSRKGSTTTVYKKDVDRKTREMLHPSSSMF
  142-  180 (62.84/39.60)	VTPR.FCTVHVISKGKLVNVRKSDVDIETSIADDRSESQF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      30.23|      11|      14|     370|     381|       3
---------------------------------------------------------------------------
  370-  381 (13.56/12.77)	ESVEREtEERLE
  387-  397 (16.67/ 9.97)	EEVRKE.KQRLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.30|      22|      30|     231|     253|       4
---------------------------------------------------------------------------
  231-  253 (36.98/27.16)	HSRAASLdVDEPNQRGYYR..TNSS
  263-  286 (35.32/20.81)	HSRRSSL.TEEGSSSGCYSdpTSCS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     259.16|      82|     180|     401|     489|       5
---------------------------------------------------------------------------
  401-  489 (130.16/110.80)	EGGPLQRQQYMKFEWedivQATSSFSDELKIgtGGYGsVYRCNLHHATVAVKVLHSDKSSLTKQFHQELEILSK......IRHPHLLLLLG.ACPE
  590-  678 (129.00/89.51)	ETGPVGTFFYIDPEY....QRTGVVTPESDI..YAFG.IILLQLATARSAMGLAHSVEKALRDQTGNFSEILDEtagdwpVKEAKEMVMIGlRCAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.65|      16|      32|     322|     337|       6
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  322-  337 (25.63/16.95)	KMQDLNQRRSEEATRL
  352-  367 (25.03/16.37)	EMERERQEEAENEAEL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01142 with Med32 domain of Kingdom Viridiplantae
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